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Summary[edit source | edit]

  • pan ID?: SAUPAN004998000
  • symbol?: pmtB
  • description?: ABC-2 transporter family protein

      descriptions from strain specific annotations:

    • ABC-2 transporter family protein
    • membrane protein
  • strand?: -
  • coordinates?: 5179803..5180483
  • synteny block?: BlockID0038790
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1890
    08BA02176:
    C248_2019
    11819-97:
    MS7_1967
    71193:
    ST398NM01_2053
    ECT-R 2:
    ECTR2_1804
    ED133:
    SAOV_2034
    ED98:
    SAAV_1999
    HO 5096 0412:
    SAEMRSA15_18480
    JH1:
    SaurJH1_2022
    JH9:
    SaurJH9_1989
    JKD6008:
    SAA6008_01964
    JKD6159:
    SAA6159_01863
    LGA251:
    SARLGA251_18160
    M013:
    M013TW_1969
    MRSA252:
    SAR2024
    MSHR1132:
    SAMSHR1132_17760
    MSSA476:
    SAS1856
    Mu3:
    SAHV_1917
    Mu50:
    SAV1932
    MW2:
    MW1873
    RF122:
    SAB1868c
    ST398:
    SAPIG2053
    T0131:
    SAT0131_02062
    TCH60:
    HMPREF0772_11209
    TW20:
    SATW20_19260
    USA300_TCH1516:
    USA300HOU_1935
    VC40:
    SAVC_08920

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILDAGHL
    N315            MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILDAGHL
    NCTC8325        MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILDAGHL
    Newman          MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILDAGHL
    USA300_FPR3757  MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILDAGHL
                    ************************************************************

    COL             FRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSI
    N315            FRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSI
    NCTC8325        FRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSI
    Newman          FRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSI
    USA300_FPR3757  FRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSI
                    ************************************************************

    COL             YFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVL
    N315            YFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVL
    NCTC8325        YFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVL
    Newman          YFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVL
    USA300_FPR3757  YFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVL
                    ************************************************************

    COL             SQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSR
    N315            SQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSR
    NCTC8325        SQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSR
    Newman          SQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSR
    USA300_FPR3757  SQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSR
                    **********************************************