From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN005158000
  • symbol?:
  • synonym:
  • description?: phage protein
  • strand?: +
  • coordinates?: 5320604..5320786
  • synteny block?: BlockID0040040
  • occurrence?: in 55% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1961
    08BA02176:
    11819-97:
    MS7_2031
    6850:
    71193:
    ST398NM01_1553
    ECT-R 2:
    ECTR2_1871
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_19240
    JH1:
    SaurJH1_2095
    JH9:
    SaurJH9_2058
    JKD6008:
    SAA6008_02054
    JKD6159:
    SAA6159_01935
    LGA251:
    M013:
    MRSA252:
    SAR2103
    MSHR1132:
    SAMSHR1132_18430
    MSSA476:
    Mu3:
    SAHV_1986
    Mu50:
    SAV2000
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02135
    TCH60:
    TW20:
    SATW20_19980
    USA300_TCH1516:
    USA300HOU_2007
    VC40:

Genome Viewer[edit | edit source]

N315
NCTC8325

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    N315            ---------------MKIKNCKIKKETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFI
    NCTC8325        MKKTSISAVFERKFIMKITNCKIKKETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFI
                                   ***.*****************************************

    N315            SQKLDGDKLTKEDSL
    NCTC8325        SQKIDGDKLTKEDSL
                    ***:***********