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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005509000
- symbol?: rocF
- synonym:
- description?: arginase
- strand?: -
- coordinates?: 5674093..5675001
- synteny block?: BlockID0042910
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2103 (arg)
08BA02176:
C248_2192 (rocF)
11819-97:
MS7_2179 (rocF)
6850:
RSAU_002000 (rocF)
71193:
ST398NM01_2219
ECT-R 2:
ECTR2_2017 (rocF)
ED133:
SAOV_2203c (rocF)
ED98:
SAAV_2218 (rocF)
HO 5096 0412:
SAEMRSA15_20700 (rocF)
JH1:
SaurJH1_2234
JH9:
SaurJH9_2196
JKD6008:
SAA6008_02201 (arg)
JKD6159:
SAA6159_02073 (arg)
LGA251:
SARLGA251_19600 (rocF)
M013:
M013TW_2122
MRSA252:
SAR2255 (rocF)
MSHR1132:
SAMSHR1132_19960
MSSA476:
SAS2066
Mu3:
SAHV_2148 (arg)
Mu50:
SAV2164 (arg)
MW2:
MW2091 (arg)
RF122:
SAB2044c (rocF)
ST398:
SAPIG2219 (rocF)
T0131:
SAT0131_02329
TCH60:
HMPREF0772_11028 (rocF)
TW20:
SATW20_22990 (rocF)
USA300_TCH1516:
USA300HOU_2154 (arg)
VC40:
SAVC_09685
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIE
N315 MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIE
NCTC8325 MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIE
Newman MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIE
USA300_FPR3757 MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIE
************************************************************
COL KFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNL
N315 KFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNL
NCTC8325 KFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNL
Newman KFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNL
USA300_FPR3757 KFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNL
************************************************************
COL GVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLD
N315 GVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLD
NCTC8325 GVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLD
Newman GVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLD
USA300_FPR3757 GVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLD
************************************************************
COL KGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPG
N315 KGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPG
NCTC8325 KGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPG
Newman KGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPG
USA300_FPR3757 KGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPG
************************************************************
COL TGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGET
N315 TGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGET
NCTC8325 TGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGET
Newman TGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGET
USA300_FPR3757 TGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGET
************************************************************
COL LL
N315 LL
NCTC8325 LL
Newman LL
USA300_FPR3757 LL
**