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Summary[edit source | edit]

  • pan ID?: SAUPAN005669000
  • symbol?: truA
  • description?: tRNA pseudouridine synthase A

      descriptions from strain specific annotations:

    • tRNA pseudouridine synthase A
    • putative tRNA pseudouridine synthase
  • strand?: -
  • coordinates?: 5791823..5792626
  • synteny block?: BlockID0044160
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2208 (truA)
    N315:
    SA2018 (truA)
    NCTC8325:
    Newman:
    NWMN_2121 (truA)
    USA300_FPR3757:
    04-02981:
    SA2981_2157 (truA)
    08BA02176:
    C248_2255
    11819-97:
    MS7_2239 (truA)
    71193:
    ST398NM01_2272
    ECT-R 2:
    ECTR2_2081 (truA)
    ED133:
    SAOV_2257c
    ED98:
    SAAV_2281 (truA)
    HO 5096 0412:
    SAEMRSA15_21180
    JH1:
    SaurJH1_2287 (truA)
    JH9:
    SaurJH9_2246 (truA)
    JKD6008:
    SAA6008_02256 (truA)
    JKD6159:
    SAA6159_02126 (truA)
    LGA251:
    SARLGA251_20050
    M013:
    M013TW_2179
    MRSA252:
    SAR2302 (truA)
    MSHR1132:
    SAMSHR1132_20450
    MSSA476:
    SAS2110 (truA)
    Mu3:
    SAHV_2203 (truA)
    Mu50:
    SAV2219 (truA)
    MW2:
    MW2138 (truA)
    RF122:
    SAB2092c (truA)
    ST398:
    SAPIG2272 (truA)
    T0131:
    SAT0131_02392
    TCH60:
    HMPREF0772_10979 (truA)
    TW20:
    SATW20_23530
    USA300_TCH1516:
    USA300HOU_2210 (truA)
    VC40:
    SAVC_09965 (truA)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
    N315            MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
    NCTC8325        MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
    Newman          MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
    USA300_FPR3757  MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
                    ************************************************************

    COL             FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
    N315            FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
    NCTC8325        FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
    Newman          FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
    USA300_FPR3757  FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
                    ************************************************************

    COL             PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
    N315            PFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
    NCTC8325        PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
    Newman          PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
    USA300_FPR3757  PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
                    ****************.*******************************************

    COL             FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
    N315            FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYLEK
    NCTC8325        FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
    Newman          FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
    USA300_FPR3757  FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
                    *******************************:****************************

    COL             IYLDENELLKDFGNDIKIHRKKSLQND
    N315            IYLDENELLKDFGNDIKIHRKKSLQND
    NCTC8325        IYLDENELLKDFGNDIKIHRKKSLQND
    Newman          IYLDENELLKDFGNDIKIHRKKSLQND
    USA300_FPR3757  IYLDENELLKDFGNDIKIHRKKSLQND
                    ***************************