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Summary[edit | edit source]

  • pan ID?: SAUPAN005686000
  • symbol?: rplR
  • synonym:
  • description?: 50S ribosomal protein L18
  • strand?: -
  • coordinates?: 5803342..5803701
  • synteny block?: BlockID0044320
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    SACOL2223 (rplR)
    N315:
    SA2032 (rplR)
    NCTC8325:
    Newman:
    NWMN_2136 (rplR)
    USA300_FPR3757:
    04-02981:
    SA2981_2172 (rplR)
    08BA02176:
    C248_2270 (rplR)
    11819-97:
    MS7_2254 (rplR)
    6850:
    RSAU_002070 (rplR)
    71193:
    ST398NM01_2287
    ECT-R 2:
    ECTR2_2096 (rplR)
    ED133:
    SAOV_2271c
    ED98:
    SAAV_2296 (rplR)
    HO 5096 0412:
    SAEMRSA15_21330 (rplR)
    JH1:
    SaurJH1_2302 (rplR)
    JH9:
    SaurJH9_2261 (rplR)
    JKD6008:
    SAA6008_02271 (rplR)
    JKD6159:
    SAA6159_02141 (rplR)
    LGA251:
    SARLGA251_20200 (rplR)
    M013:
    M013TW_2194
    MRSA252:
    SAR2319 (rplR)
    MSHR1132:
    SAMSHR1132_20600
    MSSA476:
    SAS2125 (rplR)
    Mu3:
    SAHV_2218 (rplR)
    Mu50:
    SAV2234 (rplR)
    MW2:
    MW2153 (rplR)
    RF122:
    SAB2106c (rplR)
    ST398:
    SAPIG2287 (rplR)
    T0131:
    SAT0131_02407
    TCH60:
    HMPREF0772_10964 (rplR)
    TW20:
    SATW20_23680 (rplR)
    USA300_TCH1516:
    USA300HOU_2225 (rplR)
    VC40:
    SAVC_10040 (rplR)

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKD
    N315            MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKD
    NCTC8325        MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKD
    Newman          MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKD
    USA300_FPR3757  MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKD
                    ************************************************************

    COL             SDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF
    N315            SDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF
    NCTC8325        SDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF
    Newman          SDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF
    USA300_FPR3757  SDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF
                    ***********************************************************