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Summary[edit | edit source]

  • pan ID?: SAUPAN005904000
  • symbol?: rsp
  • synonym:
  • description?: transcriptional regulator

      descriptions from strain specific annotations:

    • transcriptional regulator
    • AraC family transcriptional regulator
    • AraC family transcriptional regulator Rsp
    • transcriptional regulator, putative
    • transcriptional regulator AraC family protein
    • transcription regulatory protein
    • AraC family regulatory protein
    • AraC family transcription regulator
    • AraC transcriptional regulator
    • truncated AraC-like transcription regulatory protein
  • strand?: +
  • coordinates?: 5972114..5975167
  • synteny block?: BlockID0046480
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2318
    08BA02176:
    C248_2428
    11819-97:
    MS7_2398
    6850:
    RSAU_002217
    71193:
    ST398NM01_2434
    ECT-R 2:
    ECTR2_2240
    ED133:
    SAOV_2427
    ED98:
    SAAV_2445
    HO 5096 0412:
    SAEMRSA15_22800
    JH1:
    SaurJH1_2452
    JH9:
    SaurJH9_2405
    JKD6008:
    SAA6008_02418 (araC)
    JKD6159:
    SAA6159_02283 (araC)
    LGA251:
    SARLGA251_21650
    M013:
    M013TW_2341
    MRSA252:
    SAR2468
    MSHR1132:
    SAMSHR1132_22080
    MSSA476:
    SAS2271
    Mu3:
    SAHV_2365
    Mu50:
    SAV2381
    MW2:
    MW2301
    RF122:
    SAB2260
    ST398:
    SAPIG2434
    T0131:
    SAT0131_02570
    TCH60:
    HMPREF0772_10807
    TW20:
    SATW20_25110
    USA300_TCH1516:
    USA300HOU_2364
    VC40:
    SAVC_10761

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    NCTC8325        MTCQLKIHHTLSTIPSRNINNIMVLFSLTSKLNITINGETKDVSNYIILINHGDIYNINH
    Newman          MTCQLKIHHTLSTIPSRNINNIMVLFSLTSKLNITINGETKDVSNYIILINHGDIYNINH
    USA300_FPR3757  MTCQLKIHHTLSTIPSRNINNIMVLFSLTSKLNITINGETKDVSNYIILINHGDIYNINH
                    ************************************************************

    NCTC8325        GENIIELMIPVFYFYQQDDDFFNGYLDRHLLQSSNYIKSLIADLISTPTSSSLMGKNIGQ
    Newman          GENIIELMIPVFYFYQQDDDFFNGYLDRHLLQSSNYIKSLIADLISTPTSSSLMGKNIGQ
    USA300_FPR3757  GENIIELMIPVFYFYQQDDDFFNGYLDRHLLQSSNYIKSLIADLISTPTSSSLMGKNIGQ
                    ************************************************************

    NCTC8325        SIIDTLLKEAFIRIDHEYLPNIALSNPVFIDCVNYIHDNIDAHLSLKDIAMHCNISESYC
    Newman          SIIDTLLKEAFIRIDHEYLPNIALSNPVFIDCVNYIHDNIDAHLSLKDIAMHCNISESYC
    USA300_FPR3757  SIIDTLLKEAFIRIDHEYLPNIALSNPVFIDCVNYIHDNIDAHLSLKDIAMHCNISESYC
                    ************************************************************

    NCTC8325        SNLFVRYLSMNFKDYFTSIKLVNAINLLLSTKHSITTVSELAGFNSHTNFANQFKNYLHF
    Newman          SNLFVRYLSMNFKDYFTSIKLVNAINLLLSTKHSITTVSELAGFNSHTNFANQFKNYLHF
    USA300_FPR3757  SNLFVRYLSMNFKDYFTSIKLVNAINLLLSTKHSITTVSELAGFNSHTNFANQFKNYLHF
                    ************************************************************

    NCTC8325        SPKQFRSLVSKITEPPQIHFQQDNVSQFTELISTIDLTAQLATNTTDIHIDDFNPKDRSQ
    Newman          SPKQFRSLVSKITEPPQIHFQQDNVSQFTELISTIDLTAQLATNTTDIHIDDFNPKDRSQ
    USA300_FPR3757  SPKQFRSLVSKITEPPQIHFQQDNVSQFTELISTIDLTAQLATNTTDIHIDDFNPKDRSQ
                    ************************************************************

    NCTC8325        RAKVFVRFSNFNELFQFIFNEYYDINFEHLPKPVVFIDDIHDIEISQTNYNLLNRCFEKL
    Newman          RAKVFVRFSNFNELFQFIFNEYYDINFEHLPKPVVFIDDIHDIEISQTNYNLLNRCFEKL
    USA300_FPR3757  RAKVFVRFSNFNELFQFIFNEYYDINFEHLPKPVVFIDDIHDIEISQTNYNLLNRCFEKL
                    ************************************************************

    NCTC8325        FEKNIGLAIAIKSTQQFETMKQLILTFLQGNQDYKTSKKLVKFMLVFCSNSMTAEEIHLC
    Newman          FEKNIGLAIAIKSTQQFETMKQLILTFLQGNQDYKTSKKLVKFMLVFCSNSMTAEEIHLC
    USA300_FPR3757  FEKNIGLAIAIKSTQQFETMKQLILTFLQGNQDYKTSKKLVKFMLVFCSNSMTAEEIHLC
                    ************************************************************

    NCTC8325        HLKIKNKNKEIKYSVTVDGFLETYSTVEQVYDVMQRLKFHYYFIDIENSKTATHLITKNQ
    Newman          HLKIKNKNKEIKYSVTVDGFLETYSTVEQVYDVMQRLKFHYYFIDIENSKTATHLITKNQ
    USA300_FPR3757  HLKIKNKNKEIKYSVTVDGFLETYSTVEQVYDVMQRLKFHYYFIDIENSKTATHLITKNQ
                    ************************************************************

    NCTC8325        HYHQTDTHFEQYKKFILDSGISSTQFVYNNLSVSGFKYTNDGKNPIQLSDIVYHLIALLR
    Newman          HYHQTDTHFEQYKKFILDSGISSTQFVYNNLSVSGFKYTNDGKNPIQLSDIVYHLIALLR
    USA300_FPR3757  HYHQTDTHFEQYKKFILDSGISSTQFVYNNLSVSGFKYTNDGKNPIQLSDIVYHLIALLR
                    ************************************************************

    NCTC8325        YGGGISYQLLDDHSNYISLYNKYGSPLPLMHLYKMFRPFVNEDIEITNNYVLSRKDNNYH
    Newman          YGGGISYQLLDDHSNYISLYNKYGSPLPLMHLYKMFRPFVNEDIEITNNYVLSRKDNNYH
    USA300_FPR3757  YGGGISYQLLDDHSNYISLYNKYGSPLPLMHLYKMFRPFVNEDIEITNNYVLSRKDNNYH
                    ************************************************************

    NCTC8325        FLLFNKINDRYMSDVKQDFIFHNELPQDSLMIIKTLNHEHGSIQHLLPISDQLVYIEKEI
    Newman          FLLFNKINDRYMSDVKQDFIFHNELPQDSLMIIKTLNHEHGSIQHLLPISDQLVYIEKEI
    USA300_FPR3757  FLLFNKINDRYMSDVKQDFIFHNELPQDSLMIIKTLNHEHGSIQHLLPISDQLVYIEKEI
                    ************************************************************

    NCTC8325        LDELDKTNYPKTELAVQEETGRTFELKLNHDEVKYICFKPS
    Newman          LDELDKTNYPKTELAVQEETGRTFELKLNHDEVKYICFKPS
    USA300_FPR3757  LDELDKTNYPKTELAVQEETGRTFELKLNHDEVKYICFKPS
                    *****************************************