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Summary[edit source | edit]

  • pan ID?: SAUPAN006049000
  • symbol?:
  • description?: pseudogene
  • strand?: -
  • coordinates?: 6100804..6101971
  • synteny block?: BlockID0047920
  • occurrence?: in 75% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2414
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ECTR2_2334
    ED133:
    ED98:
    SAAV_2543
    HO 5096 0412:
    SAEMRSA15_23750
    JH1:
    SaurJH1_2554
    JH9:
    SaurJH9_2504
    JKD6008:
    SAA6008_02518
    JKD6159:
    SAA6159_02373
    LGA251:
    SARLGA251_22600
    M013:
    M013TW_2438
    MRSA252:
    SAR2566
    MSHR1132:
    MSSA476:
    SAS2369
    Mu3:
    SAHV_2461
    Mu50:
    SAV2477
    MW2:
    MW2402
    RF122:
    ST398:
    T0131:
    SAT0131_02676 (frr)
    TCH60:
    HMPREF0772_10710
    TW20:
    USA300_TCH1516:
    USA300HOU_2469
    VC40:
    SAVC_11260

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
    N315            MLVLWFIIYNVRNYRLQKNFIFHHILGVTLMNKKHVFIIIGVILCICIVASVIYLKVKYD
    NCTC8325        ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
    Newman          ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
    USA300_FPR3757  ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
                                                  ******************************

    COL             EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
    N315            EKEKQKAIYYKEQQERITLYLNHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
    NCTC8325        EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
    Newman          EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
    USA300_FPR3757  EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
                    *********************:**************************************

    COL             FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
    N315            FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
    NCTC8325        FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
    Newman          FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
    USA300_FPR3757  FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
                    **************************************************