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Summary[edit source | edit]

  • pan ID?: SAUPAN006174000
  • symbol?:
  • description?: cof family hydrolase

      descriptions from strain specific annotations:

    • cof family hydrolase
    • HAD superfamily hydrolase
    • Hydrolase (HAD superfamily)
    • cof-like hydrolase family protein
    • putative haloacid dehalogenase-like hydrolase
    • HAD family phosphatase
    • HAD hydrolase
  • strand?: -
  • coordinates?: 6242602..6243402
  • synteny block?: BlockID0048990
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2461
    08BA02176:
    C248_2583
    11819-97:
    MS7_2531
    71193:
    ST398NM01_2577
    ECT-R 2:
    ECTR2_2377
    ED133:
    SAOV_2569c
    ED98:
    SAAV_2590
    HO 5096 0412:
    SAEMRSA15_24240
    JH1:
    SaurJH1_2600
    JH9:
    SaurJH9_2548
    JKD6008:
    SAA6008_02563
    JKD6159:
    SAA6159_02421
    LGA251:
    SARLGA251_23000
    M013:
    M013TW_2497
    MRSA252:
    SAR2607
    MSHR1132:
    SAMSHR1132_23460
    MSSA476:
    SAS2411
    Mu3:
    SAHV_2509
    Mu50:
    SAV2525
    MW2:
    MW2445
    RF122:
    SAB2399c
    ST398:
    SAPIG2577
    T0131:
    SAT0131_02728
    TCH60:
    HMPREF0772_10665 (supH)
    TW20:
    SATW20_26460
    USA300_TCH1516:
    USA300HOU_2514
    VC40:
    SAVC_11500

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MVKAIAVDMDGTFLDSKKTYDKLRFEAIFTELRNRDITFIAASGNQYAKLKSIFGDRDMY
    N315            MVKAIAVDMDGTFLDSKKTYDKPRFEAIFTELRNRDITFIAASGNQYAKLKSIFGDRDMY
    NCTC8325        MVKAIAVDMDGTFLDSKKTYDKLRFEAIFTELRNRDITFIAASGNQYAKLKSIFGDRDMY
    Newman          MVKAIAVDMDGTFLDSKKTYDKLRFEAIFTELRNRDITFIAASGNQYAKLKSIFGDRDMY
    USA300_FPR3757  MVKAIAVDMDGTFLDSKKTYDKLRFEAIFTELRNRDITFIAASGNQYAKLKSIFGDRDMY
                    ********************** *************************************

    COL             FISENGAVIYNGNELYNYKSFNRQVFQQVVDYLNMKQSIDQLVICGLKSAYILKHTSEAF
    N315            FISENGAVIYKGNELYNYKSFNRQVFQQVVDYLNMNQSIDQLVICGLKSAYILKHTSEAF
    NCTC8325        FISENGAVIYNGNELYNYKSFNRQVFQQVVDYLNMKQSIDQLVICGLKSAYILKHTSEAF
    Newman          FISENGAVIYNGNELYNYKSFNRQVFQQVVDYLNMKQSIDQLVICGLKSAYILKHTSEAF
    USA300_FPR3757  FISENGAVIYNGNELYNYKSFNRQVFQQVVDYLNMKQSIDQLVICGLKSAYILKHTSEAF
                    **********:************************:************************

    COL             KEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNVDEEVATQFSNDIKLVSSGND
    N315            KEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNVDEEVATQFSNDIKLVSSGHD
    NCTC8325        KEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNVDEEVATQFSNDIKLVSSGHD
    Newman          KEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNVDEEVATQFSNDIKLVSSGND
    USA300_FPR3757  KEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNVDEEVATQFSNDIKLVSSGND
                    **********************************************************:*

    COL             SIDIIMPNMTKGQALKRLLDKWEMSPSELMAFGDANNDKDMLAFAKHSYVMENSHDEELF
    N315            SIDIIMPNMTKGQALKRLLDKWEMSPSELMAFGDANNDKDMLAFAKHSYVMENSHDEELF
    NCTC8325        SIDIIMPNMTKGQALKRLLDKWEMSPSELMAFGDANNDKDMLAFAKHSYVMENSHDEELF
    Newman          SIDIIMPNMTKGQALKRLLDKWEMSPSELMAFGDANNDKDMLAFAKHSYVMENSHDEELF
    USA300_FPR3757  SIDIIMPNMTKGQALKRLLDKWEMSPSELMAFGDANNDKDMLAFAKHSYVMENSHDEELF
                    ************************************************************

    COL             NIASAVAPSNDKQGVLTIIEQEVLKK
    N315            NIASAVAPSNDKQGVLTIIEQEVLNK
    NCTC8325        NIASAVAPSNDKQGVLTIIEQEVLKK
    Newman          NIASAVAPSNDKQGVLTIIEQEVLKK
    USA300_FPR3757  NIASAVAPSNDKQGVLTIIEQEVLKK
                    ************************:*