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Summary[edit source | edit]

  • pan ID?: SAUPAN006224000
  • symbol?:
  • description?: N-succinyldiaminopimelate aminotransferase

      descriptions from strain specific annotations:

    • N-succinyldiaminopimelate aminotransferase
    • aminotransferase, class I
    • putative aspartate aminotransferase (Transaminase A)(ASPAT)
    • class I and II aminotransferase
    • class I aminotransferase
    • putative aminotransferase
    • transaminase
    • transaminase MtnE
  • strand?: -
  • coordinates?: 6286831..6287985
  • synteny block?: BlockID0049480
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2497
    08BA02176:
    C248_2618
    11819-97:
    MS7_2567
    71193:
    ST398NM01_2611
    ECT-R 2:
    ECTR2_2413
    ED133:
    SAOV_2605c
    ED98:
    SAAV_2626
    HO 5096 0412:
    SAEMRSA15_24630
    JH1:
    SaurJH1_2636
    JH9:
    SaurJH9_2582
    JKD6008:
    SAA6008_02599
    JKD6159:
    SAA6159_02456
    LGA251:
    SARLGA251_23350
    M013:
    M013TW_2534
    MRSA252:
    SAR2641
    MSHR1132:
    SAMSHR1132_23810
    MSSA476:
    SAS2446
    Mu3:
    SAHV_2544
    Mu50:
    SAV2560
    MW2:
    MW2481
    RF122:
    SAB2433c
    ST398:
    SAPIG2611
    T0131:
    SAT0131_02771
    TCH60:
    HMPREF0772_10629 (ywfG)
    TW20:
    SATW20_26820
    USA300_TCH1516:
    USA300HOU_2555
    VC40:
    SAVC_11680

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
    N315            MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
    NCTC8325        MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
    Newman          MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
    USA300_FPR3757  MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
                    ************************************************************

    COL             YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
    N315            YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
    NCTC8325        YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
    Newman          YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
    USA300_FPR3757  YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
                    ************************************************************

    COL             PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
    N315            PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSTVDSQIIDKTKLIYLTYPNNPTGSTATK
    NCTC8325        PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
    Newman          PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
    USA300_FPR3757  PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
                    ********************************.***************************

    COL             EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
    N315            EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
    NCTC8325        EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
    Newman          EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
    USA300_FPR3757  EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
                    ************************************************************

    COL             RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
    N315            RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
    NCTC8325        RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
    Newman          RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
    USA300_FPR3757  RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
                    ************************************************************

    COL             AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
    N315            AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
    NCTC8325        AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
    Newman          AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
    USA300_FPR3757  AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
                    ************************************************************

    COL             SLALDDQKLDEAAIRLTELAYLYE
    N315            SLALDDQKLDEAAIRLTELAYLYE
    NCTC8325        SLALDDQKLDEAAIRLTELAYLYE
    Newman          SLALDDQKLDEAAIRLTELAYLYE
    USA300_FPR3757  SLALDDQKLDEAAIRLTELAYLYE
                    ************************