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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN006307000
  • symbol?:
  • description?: membrane protein
  • strand?: +
  • coordinates?: 6353182..6353513
  • synteny block?: BlockID0050230
  • occurrence?: in 56% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2546
    08BA02176:
    11819-97:
    71193:
    ST398NM01_3014
    ECT-R 2:
    ED133:
    SAOV_2652
    ED98:
    SAAV_2674
    HO 5096 0412:
    SAEMRSA15_25120
    JH1:
    SaurJH1_2684
    JH9:
    SaurJH9_2630
    JKD6008:
    JKD6159:
    SAA6159_02504
    LGA251:
    M013:
    MRSA252:
    SAR2686
    MSHR1132:
    SAMSHR1132_24230
    MSSA476:
    Mu3:
    SAHV_2592
    Mu50:
    SAV2608
    MW2:
    RF122:
    SAB2481
    ST398:
    T0131:
    TCH60:
    HMPREF0772_10584
    TW20:
    USA300_TCH1516:
    USA300HOU_2601
    VC40:

Genome Viewer[edit source | edit]

N315 chromosome
NCTC8325 chromosome
Newman chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    N315            ---------------------------MHPRKTLQLPLILKIILNLALIGIVIIVLTHTE
    NCTC8325        MAYSILNLYSILIQYKCKINHKKDIQYLHPRKTLQLPLILKIILNLALIGIVIIVLTHTE
    Newman          MAYSILNLYSILIQYKCKINHKKDIQYLHPRKTLQLPLILKIILNLALIGIVIIVLTHTE
                                               :********************************

    N315            FQLNAGDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFITRRQRTS
    NCTC8325        FQLNAGDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFITRRQRTS
    Newman          FQLNAGDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFITRRQRTS
                    *************************************************