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Summary[edit source | edit]

  • pan ID?: SAUPAN006314000
  • symbol?: betB
  • description?: betaine aldehyde dehydrogenase

      descriptions from strain specific annotations:

    • betaine aldehyde dehydrogenase
    • glycine betaine aldehyde dehydrogenase
    • glycine betaine aldehyde dehydrogenase gbsA
    • putative betaine aldehyde dehydrogenase
  • strand?: -
  • coordinates?: 6358641..6360131
  • synteny block?: BlockID0050300
  • occurrence?: in 97% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2628 (betB)
    N315:
    SA2406 (gbsA)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2551 (gbsA)
    08BA02176:
    C248_2672 (cudA)
    11819-97:
    MS7_2617 (betB)
    71193:
    ST398NM01_2660
    ECT-R 2:
    ECTR2_2466 (betB)
    ED133:
    SAOV_2658c
    ED98:
    HO 5096 0412:
    SAEMRSA15_25170 (cudA)
    JH1:
    SaurJH1_2689
    JH9:
    SaurJH9_2635
    JKD6008:
    SAA6008_02670 (gbsA)
    JKD6159:
    SAA6159_02509 (gbsA)
    LGA251:
    SARLGA251_23850 (cudA)
    M013:
    M013TW_2590
    MRSA252:
    SAR2691 (cudA)
    MSHR1132:
    SAMSHR1132_24280
    MSSA476:
    SAS2498
    Mu3:
    SAHV_2597 (gbsA)
    Mu50:
    SAV2613 (gbsA)
    MW2:
    MW2532 (gbsA)
    RF122:
    SAB2487c (cudA)
    ST398:
    SAPIG2660 (betB)
    T0131:
    SAT0131_02846
    TCH60:
    HMPREF0772_10578 (betB)
    TW20:
    SATW20_27510 (cudA)
    USA300_TCH1516:
    USA300HOU_2606 (betB)
    VC40:
    SAVC_11925

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
    N315            MELLKHLSQRQYIDGEWVESTNKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
    NCTC8325        MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
    Newman          MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
    USA300_FPR3757  MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
                    ********************:***************************************

    COL             SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
    N315            SGEWSQETAEKRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
    NCTC8325        SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
    Newman          SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
    USA300_FPR3757  SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
                    **********.*************************************************

    COL             GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
    N315            GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
    NCTC8325        GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
    Newman          GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
    USA300_FPR3757  GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
                    ************************************************************

    COL             PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
    N315            PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
    NCTC8325        PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
    Newman          PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
    USA300_FPR3757  PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
                    ************************************************************

    COL             IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
    N315            IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
    NCTC8325        IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
    Newman          IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
    USA300_FPR3757  IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
                    ************************************************************

    COL             IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
    N315            IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
    NCTC8325        IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
    Newman          IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
    USA300_FPR3757  IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
                    ************************************************************

    COL             PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
    N315            PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
    NCTC8325        PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
    Newman          PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
    USA300_FPR3757  PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
                    ************************************************************

    COL             AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
    N315            AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
    NCTC8325        AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
    Newman          AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
    USA300_FPR3757  AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
                    ************************************************************

    COL             HILTNTNPQLVNWFSK
    N315            HILTNTNPQLVNWFSK
    NCTC8325        HILTNTNPQLVNWFSK
    Newman          HILTNTNPQLVNWFSK
    USA300_FPR3757  HILTNTNPQLVNWFSK
                    ****************