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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006338000
- symbol?: nsaR
- synonym: braR
- description?: DNA-binding response regulator
- DNA-binding response regulator
- nisin susceptibility-associated DNA-binding response regulator
- response regulator transcription factor
- two-component sensor response regulator, putative
- response regulator protein
- response regulator receiver
- response regulator receiver domain/transcriptional regulatory protein
- two-component response regulator
- Two-component response regulator YvcP
- two-component sensor response regulator
- two component transcriptional regulator
- Two component transcriptional regulator, winged helix family
- winged helix family two component transcriptional regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6379205..6379871
- synteny block?: BlockID0050540
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2564 (yvcP)
08BA02176:
C248_2692
11819-97:
MS7_2630
6850:
RSAU_002468
71193:
ST398NM01_2674
ECT-R 2:
ECTR2_2479
ED133:
SAOV_2673c
ED98:
SAAV_2693
HO 5096 0412:
SAEMRSA15_25290
JH1:
SaurJH1_2704
JH9:
SaurJH9_2648
JKD6008:
SAA6008_02684
JKD6159:
SAA6159_02521
LGA251:
SARLGA251_23970
M013:
M013TW_2604
MRSA252:
SAR2703
MSHR1132:
SAMSHR1132_24410
MSSA476:
SAS2511
Mu3:
SAHV_2609
Mu50:
SAV2625
MW2:
MW2545
RF122:
SAB2500c
ST398:
SAPIG2674
T0131:
SAT0131_02888
TCH60:
HMPREF0772_10564
TW20:
SATW20_27630
USA300_TCH1516:
USA300HOU_2624
VC40:
—
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKILIVEDDFVIAESLASELKKWNYGVIVVEQFDDILSIFNQNQPQLVLLDINLPTLNGF
N315 MKILIVEDDFVIAESLASELKKWNYGVIVVEQFDDILSIFNQHQPQLVLLDINLPTLNGF
NCTC8325 MKILIVEDDFVIAESLASELKKWNYGVIVVEQFDDILSIFNQNQPQLVLLDINLPTLNGF
Newman MKILIVEDDFVIAESLASELKKWNYGVIVVEQFDDILSIFNQNQPQLVLLDINLPTLNGF
USA300_FPR3757 MKILIVEDDFVIAESLASELKKWNYGVIVVEQFDDILSIFNQNQPQLVLLDINLPTLNGF
******************************************:*****************
COL HWCQEIRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYD
N315 HWCQEIRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYD
NCTC8325 HWCQEIRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYD
Newman HWCQEIRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYD
USA300_FPR3757 HWCQEIRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYD
************************************************************
COL LSVANDSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCW
N315 LSVANDSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCW
NCTC8325 LSVANDSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCW
Newman LSVANDSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCW
USA300_FPR3757 LSVANDSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCW
************************************************************
COL ESENFIDDNTLAVNMTRLRKKLNTIGVNDFIITKKNVGYKV
N315 ESENFIDDNTLAVNMTRLRKKLNTIGVNDFIITKKNVGYKV
NCTC8325 ESENFIDDNTLAVNMTRLRKKLNTIGVNDFIITKKNVGYKV
Newman ESENFIDDNTLAVNMTRLRKKLNTIGVNDFIITKKNVGYKV
USA300_FPR3757 ESENFIDDNTLAVNMTRLRKKLNTIGVNDFIITKKNVGYKV
*****************************************