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Summary[edit source | edit]

  • pan ID?: SAUPAN006403000
  • symbol?:
  • description?: orf1
  • strand?: +
  • coordinates?: 6454866..6455320
  • synteny block?: BlockID0051100
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2597
    08BA02176:
    C248_2728
    11819-97:
    MS7_2663
    71193:
    ST398NM01_2710
    ECT-R 2:
    ECTR2_2512
    ED133:
    SAOV_2710
    ED98:
    SAAV_2730
    HO 5096 0412:
    SAEMRSA15_25650
    JH1:
    SaurJH1_2739
    JH9:
    SaurJH9_2682
    JKD6008:
    SAA6008_02718
    JKD6159:
    SAA6159_02554
    LGA251:
    SARLGA251_24320
    M013:
    M013TW_2641
    MRSA252:
    SAR2739
    MSHR1132:
    SAMSHR1132_24860
    MSSA476:
    SAS2544
    Mu3:
    SAHV_2642
    Mu50:
    SAV2658
    MW2:
    MW2578
    RF122:
    SAB2533
    ST398:
    SAPIG2710
    T0131:
    SAT0131_02937
    TCH60:
    HMPREF0772_10528
    TW20:
    SATW20_27960
    USA300_TCH1516:
    USA300HOU_2658
    VC40:
    SAVC_12170

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MILRYATNLKLAKELYQASKPKLQEDKGMIELFEHTFGLQKELVKYVGIAEATTAALYSA
    N315            MILRYATNLKLAKELYQASKPKLQEDKGMIELFEHTFGLQKELVKYVGIAEATTAALYSA
    NCTC8325        MILRYATNLKLAKELYQASKPKLQEDKGMIELFEHTFGLQKELVKYVGIAEATTAALYSA
    Newman          MILRYATNLKLAKELYQASKPKLQEDKGMIELFEHTFGLQKELVKYVGIAEATTAALYSA
    USA300_FPR3757  MILRYATNLKLAKELYQASKPKLQEDKGMIELFEHTFGLQKELVKYVGIAEATTAALYSA
                    ************************************************************

    COL             SFINKNISRLASLSTIGILSVAAYKHFEAGQGKKGAQHALNLLGLATLSLLDTFSCNKK
    N315            SFINKNISRLASLSTIGILSVAAYKHFEAGQGKKGAQHALDLLGLATLSLLDTFSCNKK
    NCTC8325        SFINKNISRLASLSTIGILSVAAYKHFEAGQGKKGAQHALNLLGLATLSLLDTFSCNKK
    Newman          SFINKNISRLASLSTIGILSVAAYKHFEAGQGKKGAQHALNLLGLATLSLLDTFSCNKK
    USA300_FPR3757  SFINKNISRLASLSTIGILSVAAYKHFEAGQGKKGAQHALNLLGLATLSLLDTFSCNKK
                    ****************************************:******************