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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1381 [new locus tag: SAUSA300_RS07540 ]
  • pan locus tag?:
  • symbol: lukF-PV
  • pan gene symbol?:
  • synonym:
  • product: Panton-Valentine leukocidin, LukF-PV

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_1381 [new locus tag: SAUSA300_RS07540 ]
  • symbol: lukF-PV
  • product: Panton-Valentine leukocidin, LukF-PV
  • replicon: chromosome
  • strand: -
  • coordinates: 1546170..1547147
  • length: 978
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAAAAATAGTCAAATCATCAGTTGTTACATCAATTGCATTGCTTTTGCTATCCAAT
    ACAGTTGATGCAGCTCAACATATCACACCTGTAAGTGAGAAAAAGGTTGATGATAAAATT
    ACTTTGTACAAAACAACTGCAACATCAGATTCCGATAAGTTAAAAATTTCTCAGATTTTA
    ACTTTTAATTTTATTAAAGATAAAAGTTATGATAAAGATACATTAATACTCAAAGCTGCT
    GGAAACATTTATTCTGGCTATACAAAGCCAAATCCAAAAGACACTATTAGTTCTCAATTT
    TATTGGGGTTCTAAGTACAACATTTCAATTAATTCAGATTCTAATGACTCAGTAAACGTT
    GTAGATTATGCACCTAAAAATCAAAATGAAGAATTTCAAGTACAACAAACGGTAGGTTAT
    TCTTATGGTGGAGATATTAATATCTCTAACGGCTTATCAGGTGGAGGTAATGGTTCAAAA
    TCTTTTTCAGAGACAATTAACTATAAACAAGAAAGCTATAGAACTAGCTTAGATAAAAGA
    ACTAATTTCAAAAAAATTGGTTGGGATGTTGAAGCACATAAAATTATGAATAATGGTTGG
    GGACCATATGGCAGAGATAGTTATCATTCAACTTATGGTAATGAAATGTTTTTAGGCTCA
    AGACAAAGCAACTTAAATGCTGGACAAAACTTCTTGGAATATCACAAAATGCCAGTGTTA
    TCCAGAGGTAACTTCAATCCAGAATTTATTGGTGTCCTATCTCGAAAACAAAACGCTGCA
    AAAAAATCGAAAATTACTGTTACTTATCAAAGAGAAATGGATAGATATACAAACTTTTGG
    AATCAACTTCACTGGATAGGTAATAATTATAAAGATGAAAATAGAGCAACTCATACATCA
    ATTTATGAAGTTGATTGGGAAAATCATACAGTTAAATTAATAGATACTCAATCTAAGGAA
    AAAAATCCTATGAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    978

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_1381 [new locus tag: SAUSA300_RS07540 ]
  • symbol: LukF-PV
  • description: Panton-Valentine leukocidin, LukF-PV
  • length: 325
  • theoretical pI: 9.56854
  • theoretical MW: 36961.9
  • GRAVY: -0.790769

Function[edit source | edit]

  • TIGRFAM:
    Cellular processesCellular processesToxin production and resistancebeta-channel forming cytolysin (TIGR01002; HMM-score: 456.1)
  • TheSEED:  
    Virulence, Disease and DefenseToxins and superantigensStaphylococcus Two-component and Pore-forming Cytolysins Panton-Valentine leukocidin chain F precursor 
  • PFAM:
    Leukocidin (CL0636) Leukocidin; Leukocidin/Hemolysin toxin family (PF07968; HMM-score: 272)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.02
    • Extracellular Score: 9.98
    • Internal Helices: 0
  • LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: -0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: NTVDAAQH
  • SignalP: Signal peptide length 25 aa
    • Ymax: 0.698
    • Ymax_pos: 25
    • Cmax: 0.533
    • Cmax_pos: 25
    • Smax: 0.942
    • Smax_pos: 23
    • Smean: 0.909
    • D: 0.78
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKKIVKSSVVTSIALLLLSNTVDAAQHITPVSEKKVDDKITLYKTTATSDSDKLKISQILTFNFIKDKSYDKDTLILKAAGNIYSGYTKPNPKDTISSQFYWGSKYNISINSDSNDSVNVVDYAPKNQNEEFQVQQTVGYSYGGDINISNGLSGGGNGSKSFSETINYKQESYRTSLDKRTNFKKIGWDVEAHKIMNNGWGPYGRDSYHSTYGNEMFLGSRQSNLNAGQNFLEYHKMPVLSRGNFNPEFIGVLSRKQNAAKKSKITVTYQREMDRYTNFWNQLHWIGNNYKDENRATHTSIYEVDWENHTVKLIDTQSKEKNPMS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]