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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1480 [new locus tag: SAUSA300_RS08080 ]
  • pan locus tag?: SAUPAN004093000
  • symbol: SAUSA300_1480
  • pan gene symbol?:
  • synonym:
  • product: putative traG membrane protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_1480 [new locus tag: SAUSA300_RS08080 ]
  • symbol: SAUSA300_1480
  • product: putative traG membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1633080..1634126
  • length: 1047
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGTAAATAAAAAAGATATTGCTAAAAAAGTAATAGGTAAAACGCCAATAGGCGTTAAA
    TTGAAATTAGCGAAAGTCATCATCATTTTATGTGTGGTGGCTTTTTTTATATTTCCAGTA
    ATTATAATGTTTTTGTTAGCGCCTGATTTAAATAAAGGTAAAGATGATGCTGGTTGTACT
    GTTAGTGGCGGTAATGTTTCGGCAAATGGTATTGATAAGTTTAACGAAAATGCTAAAGGT
    GGAAAATTAGAGGGTAAAGGAAAAGAAATACAGAAAATTGCAGAAAAAAATAAAGTACCT
    GTGAATATTTTTATGGCCATTATTGCGAGTGAATCACAATGGGGTAAAGGAGAAAATGCG
    ACAAGACAAAATAATCCTTTGTCTGTTATGGGTTCAAAATCGATTCATGATTCAACATAT
    CCAACTATTGAAGATGGTCTTAATGCGGGAGCTAAAAATTTGTATGATGTTTATATTTCT
    AAAGGTTTAGATACTCCTAAAAAAATAGGTCCCAAATATGCGCCTGTTGGTGCGTCAAAT
    GACCCTAATAATATGAATGCCCGTTGGATACCAACAGTTGAAAAAATTATGAAAGATTTA
    GGCGGTTCAGAAGCTAAAACGTCATGTAGTAATGGTAAAGGAAAGTCTATAAAGTTTAAT
    GGTAAATTGCCACATTGGTCAAATGATGACCCTGGAAAAGGTAATTTATACACTGCTGGT
    CAATGTACTTGGTATGCATACGGTATGCGTCAAAAAATGGGTAAACCTGTATCGACTTAT
    TGGCATGATGCACATAAATGGAATGATAGAGCTAAAGCTGAGGGTTATAAAGTTGATAAA
    AATCCGGAACCTGGTGCATTATTTATTGCTGAACAAGGTGCAGGCGGTCATGATGGGCAT
    TATGGTCATGTGGCTGTTGTTATTGGTGTAAGTGATGGTGGTAAAACATTTAGAATAACA
    GAAATGAATTGGGAAGGTGCTTTTAAAGTTAATGAACGTACATTGAAAATGACTGACGGA
    TATAGTTTTATTCATGATAAGGAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1047

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_1480 [new locus tag: SAUSA300_RS08080 ]
  • symbol: SAUSA300_1480
  • description: putative traG membrane protein
  • length: 348
  • theoretical pI: 9.84457
  • theoretical MW: 37824.1
  • GRAVY: -0.470402

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Secretory antigen SsaA-like protein transposon-related 
  • PFAM:
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 58)
    Lysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 37.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.191
    • Ymax_pos: 54
    • Cmax: 0.125
    • Cmax_pos: 58
    • Smax: 0.417
    • Smax_pos: 44
    • Smean: 0.265
    • D: 0.22
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MVNKKDIAKKVIGKTPIGVKLKLAKVIIILCVVAFFIFPVIIMFLLAPDLNKGKDDAGCTVSGGNVSANGIDKFNENAKGGKLEGKGKEIQKIAEKNKVPVNIFMAIIASESQWGKGENATRQNNPLSVMGSKSIHDSTYPTIEDGLNAGAKNLYDVYISKGLDTPKKIGPKYAPVGASNDPNNMNARWIPTVEKIMKDLGGSEAKTSCSNGKGKSIKFNGKLPHWSNDDPGKGNLYTAGQCTWYAYGMRQKMGKPVSTYWHDAHKWNDRAKAEGYKVDKNPEPGALFIAEQGAGGHDGHYGHVAVVIGVSDGGKTFRITEMNWEGAFKVNERTLKMTDGYSFIHDKE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]