From AureoWiki
Jump to: navigation, search
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1551 [new locus tag: SAUSA300_RS08455 ]
  • pan locus tag?: SAUPAN004178000
  • symbol: SAUSA300_1551
  • pan gene symbol?: rsfS
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_1551 [new locus tag: SAUSA300_RS08455 ]
  • symbol: SAUSA300_1551
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1702434..1702787
  • length: 354
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGAATTCACAAGAATTATTAGCAATTGCTGTGGATGCAATTGACAATAAAAAAGGCGAA
    GATACGATTTCTTTAGAAATGAAAGGTATCAGCGATATGACAGATTATTTTGTTGTAACG
    CACGGAAATAATGAACGACAAGTTCAAGCGATTGCTAGAGCGGTGAAAGAAGTAGCCAAT
    GAACAAAATATAGAAGTAAAACGTATGGAAGGATACAATGAAGCGCGTTGGATATTAATT
    GACTTAGCTGATGTTGTGGTACATGTTTTCCATAAAGACGAAAGAAATTATTATAATATT
    GAAAAGTTATATCAAGATGCACCATTAGAATCATATAGTCAGGTTGCGTATTAA
    60
    120
    180
    240
    300
    354

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_1551 [new locus tag: SAUSA300_RS08455 ]
  • symbol: SAUSA300_1551
  • description: hypothetical protein
  • length: 117
  • theoretical pI: 4.42783
  • theoretical MW: 13482
  • GRAVY: -0.463248

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein synthesisTranslation factorsribosome silencing factor (TIGR00090; HMM-score: 112.2)
    [FeFe] hydrogenase, group A (TIGR02512; EC 1.12.-.-; HMM-score: 12.9)
  • TheSEED:  
    Amino Acids and DerivativesProline and 4-hydroxyprolineProline, 4-hydroxyproline uptake and utilization Ribosomal silencing factor RsfA (former Iojap) 
  • PFAM:
    NTP_transf (CL0260) RsfS; Ribosomal silencing factor during starvation (PF02410; HMM-score: 83.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.114
    • Ymax_pos: 55
    • Cmax: 0.105
    • Cmax_pos: 39
    • Smax: 0.175
    • Smax_pos: 52
    • Smean: 0.088
    • D: 0.104
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYSQVAY

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]