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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1846 [new locus tag: SAUSA300_RS10080 ]
  • pan locus tag?: SAUPAN004845000
  • symbol: SAUSA300_1846
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_1846 [new locus tag: SAUSA300_RS10080 ]
  • symbol: SAUSA300_1846
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2007132..2008175
  • length: 1044
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGTCTATCGCTTCTTTACTACCGGATGATGTTGGTCTGAAAGCCTTAGCTGGTGTCAGT
    GCTGTTGTTGCAATGCAACCTAGTATTTATCGTTCATTTAAAACAGTTTCTGATCAAGCA
    TTGGGTAACATTATAGGTGCCATACTATCTGTTACAATGGTAACAATTTTTAGTGATAAT
    TTTATCATTATGGGTGTTACCGTCATAGTACTTATTGCTATTTTATTTAAATTTAATTTA
    GCACATGTTGCTACTTTGGCGAGTGTAACAGCATTAATCATTATGGGACAACATACCGGT
    TCTTTCTATATTACCGCCTTTTACAGGTTTGTACTTGTAATGATTGGTGTCATAAGTTCA
    TCTCTAGTTAACTTTGTGTTTCTACCACCTAAATTTGAAACAAAAATTTACTATAATTCA
    TTAAATATATCCTCAGATATTTTTATGTGGTTTAAATTAGTATTAAATGATACGACGGAG
    TTTAATAATATTAAACAAGATAGTCATAATTTAAAACAACGTGTCGAAAAGTTAGAGAAA
    ATTTATGATTACTATAGCGAAGAACGTCCTATTACAAAAAAACATATTCACCAACAGAAT
    AGAAAGAAAATACTTTTCAGAGAAGTAGTTCAGACGACTAGACAAGCTTATGAAGTATTA
    AACAAATTGTCGCGTTATCAAAACGACTTATATTTACTTAATAACAATTTCCTATTACAA
    ATCAAATTAGATTTAGATTCATTAACTGCTTTTCACGAGCAAATTTTAGCTAGCCTTTCT
    AAAAAAGCACGTTATAATGTGACACATGTTGATTATGAGTTAGATAATCCGCAGAAAAAA
    GATTTATTGTCCACATTTCAGCATGAGTTAATAAATCATCCTTATCAAACGGAATATTCG
    TTTGCCAATGTTATGCAAATTGTTGCAGCCATCGAAGAGTATCGACACCATTTAGAGCAT
    TTAGACCGCATAAGAATTAGCTTTTTCACATATCATAGATCTGATGCAGACATTGAAATT
    GTTGAAGAAGACTTTGATTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1044

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_1846 [new locus tag: SAUSA300_RS10080 ]
  • symbol: SAUSA300_1846
  • description: hypothetical protein
  • length: 347
  • theoretical pI: 6.85581
  • theoretical MW: 40123
  • GRAVY: 0.0564841

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Cofactors, Vitamins, Prosthetic Groups, PigmentsTetrapyrrolesCPO analysis Putative lipoprotein SAV1865 
  • PFAM:
    FUSC (CL0307) ArAE_1; Aromatic acid exporter family member 1 (PF06081; HMM-score: 71.3)
    FUSC_2; Fusaric acid resistance protein-like (PF13515; HMM-score: 36.5)
    FUSC; Fusaric acid resistance protein family (PF04632; HMM-score: 35.9)
    no clan definedPspB; Phage shock protein B (PF06667; HMM-score: 13.8)
    Yip1 (CL0112) DUF1700; Protein of unknown function (DUF1700) (PF08006; HMM-score: 12.9)
    FUSC (CL0307) HPP; HPP family (PF04982; HMM-score: 10)
    no clan definedDUF4118; Domain of unknown function (DUF4118) (PF13493; HMM-score: 8.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.162
    • Ymax_pos: 18
    • Cmax: 0.144
    • Cmax_pos: 59
    • Smax: 0.345
    • Smax_pos: 7
    • Smean: 0.23
    • D: 0.189
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]