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NCBI: 10-JUN-2013

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1932 [new locus tag: SAUSA300_RS10600 ]
  • pan locus tag?: SAUPAN005052000
  • symbol: SAUSA300_1932
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_1932 [new locus tag: SAUSA300_RS10600 ]
  • symbol: SAUSA300_1932
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2101552..2101902
  • length: 351
  • essential: unknown other strains

⊟Accession numbers[edit source | edit]

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGGCAAAATTAAAACGTAACATTATTCAATTAGTAGAAGATCCAAAAGCAAATGAAATT
    AAATTACAAACGTACTTAACACCACACTTCATTTCATTTGAAATTGTATACGAAGCAATG
    GATTTAATCGATGATATTGAGGACGAAAATAGCACGATGAAGCCAAGAGAAATCGCTGAC
    AGATTGATGGATATGGTTGTAAAAATTTACGATAACCAATTCGCAGTTAAAGACCTAAAA
    GAACGTATGCATGCACCTGATGGAATGAATGCACTTCGTGAACAAGTGGTTTTCATTACG
    CAAGGTCAACAAACTGAGGAAACTAGAAATTTTATCCAGAACATGAAATAA
    60
    120
    180
    240
    300
    351

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SAUSA300_1932 [new locus tag: SAUSA300_RS10600 ]
  • symbol: SAUSA300_1932
  • description: hypothetical protein
  • length: 116
  • theoretical pI: 4.64762
  • theoretical MW: 13677.7
  • GRAVY: -0.519828

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Bacteriophage 
  • PFAM:
    no clan definedLatarcin; Latarcin precursor (PF10279; HMM-score: 11.6)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.118
    • Ymax_pos: 18
    • Cmax: 0.11
    • Cmax_pos: 18
    • Smax: 0.167
    • Smax_pos: 11
    • Smean: 0.117
    • D: 0.118
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

⊟Protein sequence[edit source | edit]

  • MAKLKRNIIQLVEDPKANEIKLQTYLTPHFISFEIVYEAMDLIDDIEDENSTMKPREIADRLMDMVVKIYDNQFAVKDLKERMHAPDGMNALREQVVFITQGQQTEETRNFIQNMK

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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