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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2110
  • pan locus tag?: SAUPAN005503000
  • symbol: fmtB
  • pan gene symbol?: fmtB
  • synonym:
  • product: truncated FmtB protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_2110
  • symbol: fmtB
  • product: truncated FmtB protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2282385..2285693
  • length: 3309
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    ATGAATTTATTCAGACAACAAAAATTTAGTATCAGAAAATTTAATGTCGGTATTTTTTCA
    GCTTTAATTGCCACTGTTACTTTTATATCTACTAACCCGACAACAGCGTCTGCAGCAGAG
    CAAAATCAGCCTGCACAAAATCAACCAGCACAACCAGCTGATGCCAATACACAGCCTAAC
    GCAAATGCTGGTGCTCAAGCTAATCCTACAGCACAGCCAGCTGCACCTGCCAACCAAGGA
    CAACCAGCAGTACAACCAGCAAACCAAGGTGGACAGGCTAATCCAGCAGGAGGAGCAGCA
    CAACCAAATACACAACCAGCTGGACAAGGTAATCAAGCTGATCCGAATAACGCTGCACAA
    GCACAACCTGGAAATCAAGCAACACCGGCAAACCAAGCAGGTCAAGGAAATAACCAAGCA
    ACACCTAATAATAATGCAACACCGGCAAATCAAACACAGCCAGCGAATGCTCCAGCAGCA
    GCGCAACCAGCAGCACCTGTAGCAGCAAACGCACAAACTCAAGATCCAAATGCTAGCAAT
    ACTGGTGAAGGCAGTATTAATACGACATTAACATTTGATGATCCTGCCATATCAACAGAT
    GAGAATAGACAAGATCCAACTGTAACTGTTACAGATAAAGTAAATGGTTATTCATTAATT
    AACAACGGTAAGATTGGTTTCGTTAACTCAGAATTAAGACGAAGCGATATGTTTGATAAG
    AATAACCCTCAAAACTATCAAGCTAAAGGAAACGTGGCTGCATTAGGTCGTGTGAATGCA
    AATGATTCTACAGATCATGGTAACTTTAACGGTATTTCAAAAACTGTAAATGTAAAACCA
    GATTCAGAATTAATTATTAACTTTACTACTATGCAAACGAATAGTAAGCAAGGTGCAACA
    AATTTAGTTATTAAAGATGCTAAGAAAAATACTGAATTAGCAACTGTAAATGTTGCTAAG
    ACTGGTACTGCACATTTATTTAAAGTACCAACTGATGCTGATCGTTTAGATTTACAATTT
    ATTCCTGACAATACAGCAGTTGCTGATGCTTCAAGAATTACAACAAATAAAGATGGTTAT
    AAATACTATTCATTCATTGATAATGTAGGTCTATTCTCAGGATCACATTTATATGTCAAA
    AATAGAGATTTAGCACCGAAAGCAACTAACAATAAAGAATATACTATTAATACTGAAATC
    GGTAACAATGGTAATTTTGGTGCTTCATTAAAAGCAGATCAATTTAAATATGAAGTAACA
    TTACCACAAGGTGTAACTTACGTTAATAATTCATTAACTACAACATTCCCTAATGGTAAT
    GAAGACAGTACAGTATTGAAAAATATGACTGTTAATTATGATCAAAATGCAAATAAAGTT
    ACATTTACAAGCCAAGGTGTGACAACGGCACGTGGTACACACACTAAAGAAGTTTTATTC
    CCAGATAAATCTTTAAAATTATCATATAAAGTTAATGTTGCGAATATCGATACACCTAAA
    AATATTGATTTTAATGAAAAATTAACATATCGTACTGCTTCAGATGTTGTAATTAATAAT
    GCGCAACCAGAAGTTACACTAACTGCAGATCCATTTTCAGTAGCGGTTGAAATGAACAAA
    GATGCGTTGCAACAACAAGTAAACTCACAAGTTGATAATAGTCATTACACAACAGCATCA
    ATTGCAGAATACAATAAACTTAAACAACAAGCAGATACTATTTTAAATGAAGATGCGAAT
    CATGTTAAAACTGCAAATCGTGCATCTCAAGCGGATATTGATGGTTTAGTAACTAAATTA
    CAAGCTGCATTAATTGATAATCAAGCAGCAATTGCTGAATTAGATACTAAAGCTCAAGAA
    AAGGTTACAGCAGCACAACAAAGTAAAAAAGTTACGCAAGATGAAGTTGCAGCACTTGTA
    ACTAAAATTAACAATGATAAAAATAATGCAATCGCTGAAATTAATAAACAAACTACAGCA
    CAAGGTGTCACAACTGAAAAAGATAATGGTATCGCAGTGTTAGAACAAGATGTGATTACA
    CCAACAGTTAAACCTCAAGCGAAACAAGATATTATCCAAGCAGTTACAACTCGTAAACAA
    CAAATTAAAAAGTCAAATGCATCATTACAAGATGAAAAAGATGTAGCAAATGATAAAATT
    GGTAAAATTGAAACAAAGGCAATTAAAGATATTGATGCAGCAACAACAAATGCACAAGTA
    GAAGCCATTAAAACAAAAGCAATCAATGATATTAATCAAACTACACCTGCTACAACAGCT
    AAAGCAGCAGCTCTTGAAGAATTTGACGAAGTTGTTCAAGCACAAATTGATCAAGCACCT
    TTAAATCCTGATACAACAAATGAAGAAGTAGCGGAAGCTATTGAACGTATTAATGCAGCT
    AAAGTTTCTGGTGTTAAAGCAATTGAAGCGACAACGACTGCACAAGATTTAGAAAGAGTT
    AAAAACGAAGAAATCTCAAAAATTGAAAATATTACTGACTCTACGCAAACAAAAATGGAT
    GCCTATAATGAAGTTAAACAAGCTGCAACAGCTAGAAAAGCTCAAAATGCTACAGTTTCA
    AATGCAACAAATGAAGAAGTAGCAGAAGCTGATGCAGCAGTAGATGCAGCTCAAAAGCAA
    GGTTTACATGACATCCAAGTTGTTAAATCAAAACAGGAAGTTGCTGATACAAAATCAAAA
    GTATTAGATAAAATCAATGCAATTCAAACACAAGCAAAAGTTAAACCTGCAGCTGATACG
    GAAGTAGAAAACGCATATAATACACGTAAACAAGAAATTCAAAATAGCAATGCTTCAACT
    ACAGAAGAAAAACAAGCTGCATATACAGAATTAGATACTAAAAAGCAAGAAGCAAGAACA
    AATCTTGATGCTGCAAATACAAACAGTGATGTAACAACAGCTAAAGACAATAGTATTGCT
    GCAATTAATCAAGTTCAAGCTGCCACAACTAAGAAATCGGATGCAAAAGCGGAAATCGCT
    CAAAAAGCAAGTGAACGTAAAACAGCAATTGAAGCAATGAATGATTCGACTACTGAAGAA
    CAACAAGCAGCGAAAGACAAAGTGGATCAAGCAGTAGTTACTGCAAACGCTGATATAGAT
    AATGCTGCAGCAAACAATGATGTGGATAATGCAAAAACTACAAATGAAGCTACAATCGCA
    GCCATTACACCTGATGCAAATGTTAAACCAGCAGCAAAACAAGCAATTGCAGATAAAGTA
    CAAGCTCAAGAAACAGCAATTGATGGAAATAACGGCTCAACAACTGAAGAAAAAGCAGCT
    GCTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3309

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_2110
  • symbol: FmtB
  • description: truncated FmtB protein
  • length: 1102
  • theoretical pI: 4.74894
  • theoretical MW: 117310
  • GRAVY: -0.695554

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    SasC/Mrp/FmtB intercellular aggregation domain (TIGR04263; HMM-score: 402.7)
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 42.9)
  • TheSEED:  
    FmtB (Mrp) protein involved in methicillin resistance and cell wall biosynthesis 
    truncated 
  • PFAM:
    B_GA (CL0598) DUF1542; Domain of Unknown Function (DUF1542) (PF07564; HMM-score: 263.6)
    no clan definedYSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 34.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 9.94
    • Extracellular Score: 0.06
    • Internal Helices: 0
  • LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: -0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: TTASAAEQ
  • SignalP: Signal peptide length 39 aa
    • Ymax: 0.854
    • Ymax_pos: 39
    • Cmax: 0.868
    • Cmax_pos: 39
    • Smax: 0.937
    • Smax_pos: 26
    • Smean: 0.844
    • D: 0.85
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPTAQPAAPANQGQPAVQPANQGGQANPAGGAAQPNTQPAGQGNQADPNNAAQAQPGNQATPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNNSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVKTANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTAQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEISKIENITDSTQTKMDAYNEVKQAATARKAQNATVSNATNEEVAEADAAVDAAQKQGLHDIQVVKSKQEVADTKSKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKQAAYTELDTKKQEARTNLDAANTNSDVTTAKDNSIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNAAANNDVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDGNNGSTTEEKAAAK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]