NCBI: 10-JUN-2013

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_2409 [new locus tag: SAUSA300_RS13340 ]
• pan locus tag^?: SAUPAN006025000
• symbol: SAUSA300_2409
• pan gene symbol^?: cnzC
• synonym:
• product: oligopeptide ABC transporter permease

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_2409 [new locus tag: SAUSA300_RS13340 ]
• symbol: SAUSA300_2409
• product: oligopeptide ABC transporter permease
• replicon: chromosome
• strand: -
• coordinates: 2593939..2594808
• length: 870
• essential: unknown other strains

⊟Accession numbers

• Gene ID: 3914214 NCBI
• RefSeq: YP_495044 NCBI
• MicrobesOnline: 1293924 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  ATGATAATTTTAAAACGATTATTACAAGATAAAGGTGCAGTAATTGCTTTAGGCATTATT
  GTATTATATGTCTTTTTAGGATTAGCAGCACCACTTGTGACATTTTATGATCCTAACCAT
  ATCGATACAGCAAACAAATTTGCTGGCATGAGTTTTCAACATCTACTAGGTACTGACCAT
  TTAGGTAGAGATATTTTAACTAGGTTAATTTATGCGATTAGACCAAGTTTGTTATATGTC
  TTTGTTGCGCTATTTGTTTCTGTACTTATTGGATCTATTTTAGGATTCTTATCAGGATAT
  TTCCAAGGGTTTGTTGACGCCTTAATCATGCGTGCGTGTGATGTTATGTTGGCATTCCCA
  AGTTATGTTGTAACGTTAGCATTAATTGCATTGTTTGGAATGGGTGCCGAAAATATTATC
  ATGGCATTTATTTTGACGCGTTGGGCATGGTTCTGTCGTGTTATACGTACAAGTGTTATG
  CAGTACACTGCTTCTGACCATGTAAGATTTGCTAAAACAATCGGTATGAATGATATGAAA
  ATTATTCACAAACATATTATGCCATTAACATTAGCAGATATTGCTATCATCTCTAGTAGC
  TCGATGTGTTCAATGATCTTGCAAATATCTGGCTTTTCATTTTTAGGATTAGGTGTCAAA
  GCGCCTACTGCAGAGTGGGGCATGATGCTTAACGAAGCTAGAAAAGTGATGTTTACACAT
  CCTGAAATGATGTTTGCGCCAGGTATTGCCATAGTGATTATAGTGATGGCATTTAACTTC
  TTATCCGATGCTTTACAAATTGCTATTGATCCCCGCATCTCTTCTAAAGATAAACTTCGT
  TCTGTGAAAAAAGGAGTGGTGCAATCATGA
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⊟Protein

⊟General

• locus tag: SAUSA300_2409 [new locus tag: SAUSA300_RS13340 ]
• symbol: SAUSA300_2409
• description: oligopeptide ABC transporter permease
• length: 289
• theoretical pI: 9.76066
• theoretical MW: 31965.3
• GRAVY: 0.802076

⊟Function

• reaction:
• TIGRFAM:
  MetabolismTransport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 284.3)
  and 3 more
  MetabolismTransport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 29.4)
  2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 18.1)
  NifC-like ABC-type porter (TIGR01581; HMM-score: 14.4)
• TheSEED:  
  Membrane TransportMembrane Transport - no subcategoryTransport of Nickel and Cobalt Nickel transport system permease protein NikC (TC 3.A.1.5.3) 
• PFAM:
  BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 88.1)
  and 2 more
  no clan definedOppC_N; N-terminal TM domain of oligopeptide transport permease C (PF12911; HMM-score: 25.2)
  CM2; Influenza C virus M2 protein (PF03021; HMM-score: 11.6)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 5
• LocateP: Multi-transmembrane
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular Possibility: 0.17
  • Signal Peptide Possibility: -0.5
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • Ymax: 0.174
  • Ymax_pos: 37
  • Cmax: 0.172
  • Cmax_pos: 44
  • Smax: 0.362
  • Smax_pos: 29
  • Smean: 0.176
  • D: 0.175
• predicted transmembrane helices (TMHMM): 5

⊟Accession numbers

• GI: 87162365 NCBI
• RefSeq: YP_495044 NCBI
• UniProt: A0A0H2XJ16 UniProt

⊟Protein sequence

• MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFPSYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTHPEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SAUSA300_2406 < SAUSA300_2407 < SAUSA300_2408 < SAUSA300_2409 < SAUSA300_2410 < opp-1A

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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