NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_2409 [new locus tag: SAUSA300_RS13340 ]
- pan locus tag?: SAUPAN006025000
- symbol: SAUSA300_2409
- pan gene symbol?: cnzC
- synonym:
- product: oligopeptide ABC transporter permease
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_2409 [new locus tag: SAUSA300_RS13340 ]
- symbol: SAUSA300_2409
- product: oligopeptide ABC transporter permease
- replicon: chromosome
- strand: -
- coordinates: 2593939..2594808
- length: 870
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3914214 NCBI
- RefSeq: YP_495044 NCBI
- MicrobesOnline: 1293924 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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841ATGATAATTTTAAAACGATTATTACAAGATAAAGGTGCAGTAATTGCTTTAGGCATTATT
GTATTATATGTCTTTTTAGGATTAGCAGCACCACTTGTGACATTTTATGATCCTAACCAT
ATCGATACAGCAAACAAATTTGCTGGCATGAGTTTTCAACATCTACTAGGTACTGACCAT
TTAGGTAGAGATATTTTAACTAGGTTAATTTATGCGATTAGACCAAGTTTGTTATATGTC
TTTGTTGCGCTATTTGTTTCTGTACTTATTGGATCTATTTTAGGATTCTTATCAGGATAT
TTCCAAGGGTTTGTTGACGCCTTAATCATGCGTGCGTGTGATGTTATGTTGGCATTCCCA
AGTTATGTTGTAACGTTAGCATTAATTGCATTGTTTGGAATGGGTGCCGAAAATATTATC
ATGGCATTTATTTTGACGCGTTGGGCATGGTTCTGTCGTGTTATACGTACAAGTGTTATG
CAGTACACTGCTTCTGACCATGTAAGATTTGCTAAAACAATCGGTATGAATGATATGAAA
ATTATTCACAAACATATTATGCCATTAACATTAGCAGATATTGCTATCATCTCTAGTAGC
TCGATGTGTTCAATGATCTTGCAAATATCTGGCTTTTCATTTTTAGGATTAGGTGTCAAA
GCGCCTACTGCAGAGTGGGGCATGATGCTTAACGAAGCTAGAAAAGTGATGTTTACACAT
CCTGAAATGATGTTTGCGCCAGGTATTGCCATAGTGATTATAGTGATGGCATTTAACTTC
TTATCCGATGCTTTACAAATTGCTATTGATCCCCGCATCTCTTCTAAAGATAAACTTCGT
TCTGTGAAAAAAGGAGTGGTGCAATCATGA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_2409 [new locus tag: SAUSA300_RS13340 ]
- symbol: SAUSA300_2409
- description: oligopeptide ABC transporter permease
- length: 289
- theoretical pI: 9.76066
- theoretical MW: 31965.3
- GRAVY: 0.802076
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Transport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 284.3)Transport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 29.4)2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 18.1)NifC-like ABC-type porter (TIGR01581; HMM-score: 14.4)
- TheSEED:
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 88.1)no clan definedOppC_N; N-terminal TM domain of oligopeptide transport permease C (PF12911; HMM-score: 25.2)CM2; Influenza C virus M2 protein (PF03021; HMM-score: 11.6)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular Possibility: 0.17
- Signal Peptide Possibility: -0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.174
- Ymax_pos: 37
- Cmax: 0.172
- Cmax_pos: 44
- Smax: 0.362
- Smax_pos: 29
- Smean: 0.176
- D: 0.175
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFPSYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTHPEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- MicrobesOnline: SAUSA300_2406 < SAUSA300_2407 < SAUSA300_2408 < SAUSA300_2409 < SAUSA300_2410 < opp-1A
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]