NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS01480 [old locus tag: SAUSA300_0276 ]
- pan locus tag?: SAUPAN001173000
- symbol: SAUSA300_RS01480
- pan gene symbol?: —
- synonym:
- product: DUF5080 domain-containing protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS01480 [old locus tag: SAUSA300_0276 ]
- symbol: SAUSA300_RS01480
- product: DUF5080 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 328650..329237
- length: 588
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (328650..329237) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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541ATGATAATTTTTATTTTAATAACAATATTTGCTATTTATTATATAGCTATGATTGCTAGT
TTGTTTAAAAGTGAAGGTTTTTCAATAATAGGTTTAATATTAGATGTTGTTATAATGGGG
ACATTGATTTTTTACTATTTTATAGGCGCTCGCTTTGTTGATCATGATTTAAGCAACTTT
TTAATGTTTATGGATACTGGATCATATATTTTTATGTACTTTGCAATTAAGTGTTTATGG
GTGAAACCTAAGGTAGTAAATTATTTGATTGCAAAAGAATTGGGTGAATCTAAAGAGGTC
ATTGAAGAGCAGGAATTAGATTTACAGACATCAAAGATAAGAGGTATCTACTTTTTCATT
ATTTCAGTAGTGATGTTAATTATCACTAAATTAAGAATGCAACCTGAGTTACAGGCAGAT
GCTATATCGATGAATCCTGTATTTATTTTTGTTGGTGTTATAATCATTTTAATTTGGCTA
GTACTGGATATATATCGCAAGAAAAAATACGGTATATTCTTATTCAAGACGATAGTGCCA
CTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS01480 [old locus tag: SAUSA300_0276 ]
- symbol: SAUSA300_RS01480
- description: DUF5080 domain-containing protein
- length: 195
- theoretical pI: 8.36398
- theoretical MW: 22572.4
- GRAVY: 1.10974
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Cell envelopeOtherLPXTG cell wall anchor domain (TIGR01167; HMM-score: 9.3)
- TheSEED:
- PFAM: no clan definedDUF5080; Domain of unknown function (DUF5080) (PF16883; HMM-score: 290.7)DUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 10.3)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.095
- Ymax_pos: 19
- Cmax: 0.134
- Cmax_pos: 19
- Smax: 0.097
- Smax_pos: 10
- Smean: 0.07
- D: 0.085
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MIIFILITIFAIYYIAMIASLFKSEGFSIIGLILDVVIMGTLIFYYFIGARFVDHDLSNFLMFMDTGSYIFMYFAIKCLWVKPKVVNYLIAKELGESKEVIEEQELDLQTSKIRGIYFFIISVVMLIITKLRMQPELQADAISMNPVFIFVGVIIILIWLVLDIYRKKKYGIFLFKTIVPLVVTTWIIIATIILS
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS01480 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]