From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS01590 [old locus tag: SAUSA300_0298 ]
  • pan locus tag?: SAUPAN001215000
  • symbol: SAUSA300_RS01590
  • pan gene symbol?:
  • synonym:
  • product: TIGR01741 family protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS01590 [old locus tag: SAUSA300_0298 ]
  • symbol: SAUSA300_RS01590
  • product: TIGR01741 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 350139..350639
  • length: 501
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACTTTCGAAGAAAAACTAAGTGAAATATACAACAAGATTGCGAATGAGATTAGTGGG
    ATGATACCAGTAGAATGGGACCAAGTATTTACGATAGCTTATGTAAATGATAGAGGTGGA
    GAGATCGTTTTTAATTATACTAAACCAGGTAGCGATGAATTGAATTATTACACATATATC
    CCTAGAGAGTATAATGTCTCTGAAAAAGTATTTTATGATTTGTGGACGGATTTATATAGA
    TTGTTTAAGAAGTTAAGAAACGCATTTAAAGAAGAAGATTTAGAACCATGGACATCATGT
    GAATTTGACTTTACAAGAGATGGTAAATTGAATGTTGTATTTGATTATGTTGATTGGATG
    AATTCAGAATTTGGTCCAATAGCAAAAGAAAATTATTATATGTACAAAAAGTTTGGTGTT
    TTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGATCAATATGTTAAAGAG
    CAAGATGAAGCTGAACTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    501

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_RS01590 [old locus tag: SAUSA300_0298 ]
  • symbol: SAUSA300_RS01590
  • description: TIGR01741 family protein
  • length: 166
  • theoretical pI: 4.14516
  • theoretical MW: 20015.3
  • GRAVY: -0.648795

Function[edit | edit source]

  • TIGRFAM:
    conserved hypothetical protein (TIGR01741; HMM-score: 234.4)
    and 1 more
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage portal protein, SPP1 family (TIGR01538; HMM-score: 15.3)
  • TheSEED: see SAUSA300_0298
  • PFAM:
    no clan defined DUF600; Protein of unknown function, DUF600 (PF04634; HMM-score: 155.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005899
    • TAT(Tat/SPI): 0.000347
    • LIPO(Sec/SPII): 0.000688
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTFEEKLSEIYNKIANEISGMIPVEWDQVFTIAYVNDRGGEIVFNYTKPGSDELNYYTYIPREYNVSEKVFYDLWTDLYRLFKKLRNAFKEEDLEPWTSCEFDFTRDGKLNVVFDYVDWMNSEFGPIAKENYYMYKKFGVLPETEYEINKVKEIDQYVKEQDEAEL

Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]