NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS02790 [old locus tag: SAUSA300_0521 ]
- pan locus tag?: SAUPAN002305000
- symbol: SAUSA300_RS02790
- pan gene symbol?: nusG
- synonym:
- product: transcription termination/antitermination protein NusG
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS02790 [old locus tag: SAUSA300_0521 ]
- symbol: SAUSA300_RS02790
- product: transcription termination/antitermination protein NusG
- replicon: chromosome
- strand: +
- coordinates: 581322..581870
- length: 549
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (581322..581870) NCBI
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
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481
541ATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAA
AATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATC
TTTAGAGTAGTCATACCGGAAGAAGAAGAAACTCAAGTAAAAGATGGCAAAGCTAAAACG
ACTGTTAAAAAAACATTCCCTGGATATGTTTTAGTGGAATTAATCATGACAGATGAATCA
TGGTATGTGGTAAGAAATACACCAGGCGTTACTGGTTTTGTAGGTTCTGCAGGTGCAGGG
TCTAAGCCAAATCCATTGTTACCAGAAGAAGTTCGCTTCATCTTAAAACAAATGGGTCTT
AAAGAAAAGACTATCGATGTTGAACTCGAAGTTGGCGAGCAAGTTCGTATTAAATCAGGT
CCATTTGCGAATCAAGTTGGTGAAGTTCAAGAAATTGAAACAGATAAGTTTAAGCTAACA
GTATTAGTAGATATGTTTGGCCGAGAAACACCAGTAGAAGTTGAATTCGATCAAATAGAA
AAGCTTTAA60
120
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549
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS02790 [old locus tag: SAUSA300_0521 ]
- symbol: SAUSA300_RS02790
- description: transcription termination/antitermination protein NusG
- length: 182
- theoretical pI: 4.78638
- theoretical MW: 20663.5
- GRAVY: -0.423626
⊟Function[edit source | edit]
- TIGRFAM: TranscriptionTranscription factorstranscription termination/antitermination factor NusG (TIGR00922; HMM-score: 203.6)and 3 moreNusG family protein (TIGR01956; HMM-score: 106.4)TranscriptionTranscription factorstranscription elongation factor/antiterminator RfaH (TIGR01955; HMM-score: 61.1)transcription elongation factor Spt5 (TIGR00405; HMM-score: 27)
- TheSEED:
- PFAM: NusG-like (CL0439) NusG; Transcription termination factor nusG (PF02357; HMM-score: 96.1)and 1 moreKOW (CL0107) KOW; KOW motif (PF00467; HMM-score: 29)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005909
- TAT(Tat/SPI): 0.000544
- LIPO(Sec/SPII): 0.00119
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKTTVKKTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMGLKEKTIDVELEVGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
⊟Regulation[edit source | edit]
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]