NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS05105 [old locus tag: SAUSA300_0950 ]
- pan locus tag?: SAUPAN003250000
- symbol: SAUSA300_RS05105
- pan gene symbol?: sspB
- synonym:
- product: staphopain B
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS05105 [old locus tag: SAUSA300_0950 ]
- symbol: SAUSA300_RS05105
- product: staphopain B
- replicon: chromosome
- strand: -
- coordinates: 1038279..1039460
- length: 1182
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (1038279..1039460) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1141ATGAATAGTTCATGTAAATCTAGAGTATTCAATATTATAAGCATCATAATGGTTTCAATG
CTTATTTTATCACTAGGCGCATTTGCTAATAACAATAAAGCCAAAGCCGATTCACACTCT
AAACAGCTAGAAATTAATGTTAAGAGTGACAAAGTACCTCAAAAAGTAAAAGATCTAGCA
CAACAACAATTTGCTGGTTATGCTAAAGCATTAGATAAACAAAGTAATGCAAAAACTGGT
AAATATGAACTTGGCGAAGCTTTTAAAATTTATAAATTTAATGGTGAAGAAGATAATAGT
TACTATTATCCAGTTATAAAAGACGGTAAAATTGTTTATACTTTAACACTTAGTCCTAAA
AATAAAGATGATTTAAACAAATCAAAAGAAGACATGAATTACAGTGTTAAAATTTCAAAC
TTCATCGCTAAAGATTTAGACCAAATTAAAGATAAAAATTCAAATATCACTGTTCTTACT
GATGAAAAAGGGTTTTATTTTGAAGAAGATGGCAAAGTTAGATTAGTAAAAGCTACGCCT
CTACCTGGTAATGTAAAAGAAAAAGAAAGTGCTAAAACAGTTTCAGCAAAATTGAAACAA
GAGTTAAAAAATACAGTAACACCTACTAAAGTTGAAGAAAACGAAGCGATACAAGAAGAT
CAAGTTCAATATGAAAATACATTAAAAAACTTCAAAATTAGAGAACAACAATTCGATAAC
TCATGGTGTGCAGGATTCAGTATGGCAGCATTATTAAATGCAACTAAAAATACAGACACT
TATAATGCACATGATATTATGCGTACATTATACCCTGAAGTAAGTGAGCAAGACCTTCCT
AATTGTGCAACATTCCCTAATCAAATGATTGAATACGGTAAATCACAAGGCAGAGATATT
CATTATCAAGAAGGCGTACCATCATATGAACAAGTTGATCAACTTACAAAAGATAATGTA
GGAATTATGATCCTTGCACAAAGTGTATCTCAAAACCCTAATGACCCACATTTAGGACAT
GCGCTAGCAGTTGTTGGTAATGCTAAAATTAATGACCAAGAAAAACTTATTTACTGGAAT
CCTTGGGATACAGAATTATCAATCCAAGATGCAGATTCAAGCCTATTACATTTATCATTC
AATCGTGATTATAACTGGTATGGTTCAATGATAGGTTACTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS05105 [old locus tag: SAUSA300_0950 ]
- symbol: SAUSA300_RS05105
- description: staphopain B
- length: 393
- theoretical pI: 5.75782
- theoretical MW: 44518.8
- GRAVY: -0.655471
⊟Function[edit source | edit]
- reaction: EC 3.4.22.48? ExPASyStaphopainBroad endopeptidase action on proteins including elastin, but rather limited hydrolysis of small-molecule substrates. Assays are conveniently made with hemoglobin, casein or Z-Phe-Arg-NHMec as substrate
- TIGRFAM:
- TheSEED:
- PFAM: Peptidase_CA (CL0125) Peptidase_C47; Staphopain peptidase C47 (PF05543; HMM-score: 316.3)Cystatin (CL0121) Staphopain_pro; Staphopain proregion (PF14731; HMM-score: 269.1)no clan definedNusG_II; NusG domain II (PF07009; HMM-score: 7.2)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 10
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide length 37 aa
- Ymax: 0.796
- Ymax_pos: 37
- Cmax: 0.826
- Cmax_pos: 37
- Smax: 0.925
- Smax_pos: 23
- Smean: 0.774
- D: 0.788
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MNSSCKSRVFNIISIIMVSMLILSLGAFANNNKAKADSHSKQLEINVKSDKVPQKVKDLAQQQFAGYAKALDKQSNAKTGKYELGEAFKIYKFNGEEDNSYYYPVIKDGKIVYTLTLSPKNKDDLNKSKEDMNYSVKISNFIAKDLDQIKDKNSNITVLTDEKGFYFEEDGKVRLVKATPLPGNVKEKESAKTVSAKLKQELKNTVTPTKVEENEAIQEDQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYEQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS05105 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]