NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
• pan locus tag^?: SAUPAN004375000
• symbol: SAUSA300_RS09100
• pan gene symbol^?: —
• synonym:
• product: glycerophosphoryl diester phosphodiesterase

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
• symbol: SAUSA300_RS09100
• product: glycerophosphoryl diester phosphodiesterase
• replicon: chromosome
• strand: -
• coordinates: 1832192..1832935
• length: 744
• essential: unknown

⊟Accession numbers

• Location: NC_007793 (1832192..1832935) NCBI
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

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  ATGACTCTGAATAAACTGAAAGATGAATTACAAATTGTTTCGCACCGTGGATTGCCGAGT
  GATTTTCCTGAAAATACAATGGTCGGTTATCGAGAGGTAATGGGGCTCAATGTTGCTATG
  TTAGAAATAGATGTTCATTTGACCAAAGACCAACATTTTGTTGTGATACATGATGAAACA
  ATTGATAGAACATCGGATGGTAAGGGGCGTATTGCTGATTACACATTATCGCAATTAAAA
  TCATTTGATTTTGGTAGTTATAAAGATGTTGCTTTTAAGGGAGAACGAATACCCACGTTA
  GATGAAGTACTTTCATTATGCTTAAAGTATGATAAAAAGCTATTGATTGAATTGAAAAGT
  CCGAATTTATATCCAGAAATAGAATGTAAATTGCTGGCATTTTTGGAAGAAAAGAAAGTC
  GATGCGACACAAGTAGTTATACAATCTTTTGATATCGAATGCATCGAAAAGTTAAACACA
  TTGGGCAGTATATATGAATTAGGTGTGCTTTGTAGTAAACGTAATTATTGGTATAAAAAG
  CCAAACTTTTCAAGAATTGCTCAAATTGCTAGTTATGTTAATCCTAATTATGCATTAGTG
  ACCAGAAAATTTGTTGATAAAGCACATCATCATCAATTACAGGTTATGCCATACACAGTT
  AATAAATTGAAAACTGGAGAAAAATTAAGACAAATGGGTGTAGATGGATTAATTACAGAT
  AATCCGAAATTATTTATTAAGTGA
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⊟Protein

⊟General

• locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
• symbol: SAUSA300_RS09100
• description: glycerophosphoryl diester phosphodiesterase
• length: 247
• theoretical pI: 7.97488
• theoretical MW: 28404.8
• GRAVY: -0.276923

⊟Function

• reaction:
• TIGRFAM:
• TheSEED:
• PFAM:
  PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 145.5)
  GDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 22.6)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 9.97
  • Cytoplasmic Membrane Score: 0
  • Cellwall Score: 0.01
  • Extracellular Score: 0.02
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.118
  • Ymax_pos: 13
  • Cmax: 0.104
  • Cmax_pos: 32
  • Smax: 0.158
  • Smax_pos: 1
  • Smean: 0.137
  • D: 0.126
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446096427 NCBI
• RefSeq: WP_000174282 NCBI
• UniProt:

⊟Protein sequence

• MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITDNPKLFIK

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SAUSA300_RS09100 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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