NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
- pan locus tag?: SAUPAN004375000
- symbol: SAUSA300_RS09100
- pan gene symbol?: —
- synonym:
- product: glycerophosphoryl diester phosphodiesterase
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
- symbol: SAUSA300_RS09100
- product: glycerophosphoryl diester phosphodiesterase
- replicon: chromosome
- strand: -
- coordinates: 1832192..1832935
- length: 744
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (1832192..1832935) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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721ATGACTCTGAATAAACTGAAAGATGAATTACAAATTGTTTCGCACCGTGGATTGCCGAGT
GATTTTCCTGAAAATACAATGGTCGGTTATCGAGAGGTAATGGGGCTCAATGTTGCTATG
TTAGAAATAGATGTTCATTTGACCAAAGACCAACATTTTGTTGTGATACATGATGAAACA
ATTGATAGAACATCGGATGGTAAGGGGCGTATTGCTGATTACACATTATCGCAATTAAAA
TCATTTGATTTTGGTAGTTATAAAGATGTTGCTTTTAAGGGAGAACGAATACCCACGTTA
GATGAAGTACTTTCATTATGCTTAAAGTATGATAAAAAGCTATTGATTGAATTGAAAAGT
CCGAATTTATATCCAGAAATAGAATGTAAATTGCTGGCATTTTTGGAAGAAAAGAAAGTC
GATGCGACACAAGTAGTTATACAATCTTTTGATATCGAATGCATCGAAAAGTTAAACACA
TTGGGCAGTATATATGAATTAGGTGTGCTTTGTAGTAAACGTAATTATTGGTATAAAAAG
CCAAACTTTTCAAGAATTGCTCAAATTGCTAGTTATGTTAATCCTAATTATGCATTAGTG
ACCAGAAAATTTGTTGATAAAGCACATCATCATCAATTACAGGTTATGCCATACACAGTT
AATAAATTGAAAACTGGAGAAAAATTAAGACAAATGGGTGTAGATGGATTAATTACAGAT
AATCCGAAATTATTTATTAAGTGA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
- symbol: SAUSA300_RS09100
- description: glycerophosphoryl diester phosphodiesterase
- length: 247
- theoretical pI: 7.97488
- theoretical MW: 28404.8
- GRAVY: -0.276923
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 145.5)GDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 22.6)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.118
- Ymax_pos: 13
- Cmax: 0.104
- Cmax_pos: 32
- Smax: 0.158
- Smax_pos: 1
- Smean: 0.137
- D: 0.126
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITDNPKLFIK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS09100 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]