NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS14555 [old locus tag: SAUSA300_2619 ]
- pan locus tag?: SAUPAN006442000
- symbol: SAUSA300_RS14555
- pan gene symbol?: —
- synonym:
- product: DNA-directed RNA polymerase subunit delta
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS14555 [old locus tag: SAUSA300_2619 ]
- symbol: SAUSA300_RS14555
- product: DNA-directed RNA polymerase subunit delta
- replicon: chromosome
- strand: -
- coordinates: 2845802..2846650
- length: 849
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (2845802..2846650) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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841ATGGGAAATTATTTGGTATTGCAATCAGATTTTGGACTTAGTGATGGCGCTGTAAGTGCA
ATGTATGGAGTTGCATATACTGTAAGTGATGATATACGTGTTGAAAACTTAACGCATGAT
ATACCACCGTATGACATTTGGGTAGCGTCATATCGTTTATATCAAACTGTAAAATACTGG
CCTAAAGGCACAGTTTTTGTATCAGTGGTAGACCCGGGTGTAGGTAGTGATAGGCGGAGC
ATTGCTTGCTTAACATATTCAGGTCATTACATTATTACACCTGATAATGGTTCTTTAAGT
CATATTAAACATTACGAAGGTATTAAAAAAGTTATCGAAATTGATGAAGTGAAAAGCCGA
TTGCCTCATTCGGAAGAAAGTCATACTTTTCATGGTAGAGATGTTTATGCATACAATGGT
GCGAGATTAGCTGCAAATAAGATAGCGTTTGAACGTCTCGGTCAGGCAATTAATGTTGAT
AGTATTGAGGCATTAGAAATAAGAGAAGTGACAAAAAATGAGGATTCTGTTACAGGAAGC
ATTGATATTTTAGATATCAGATTTGGGTCATTATGGACAAATATTCCATTGGCATTCTTA
AAATCCTTGGAAATTGTTCATGGTAATAATTTGGTGGTAACAATTTATCATCAAGATAAG
AAAGTCTATCAAAATATTATTAAATTTGCGCGATCGTTTGCAGATGTTAATGTGGGTGAA
CCTCTTGTGTATGTTAACTCGCTAGTAAATATTGGTGTAGCAGTCAATCAAGACTCATTT
TCAGATTTATATCATATTGGTACTGGAAATGATTGGACGATTCATTTATCTAAAGCACCA
TCAATATAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS14555 [old locus tag: SAUSA300_2619 ]
- symbol: SAUSA300_RS14555
- description: DNA-directed RNA polymerase subunit delta
- length: 282
- theoretical pI: 5.93783
- theoretical MW: 31439.2
- GRAVY: -0.0819149
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Cellular processesBiosynthesis of natural productsadenosyl-fluoride synthase (TIGR04507; EC 2.5.1.63; HMM-score: 79.5)Biosynthesis of cofactors, prosthetic groups, and carriersPyridine nucleotidesnicotinamide-nucleotide adenylyltransferase (TIGR01527; EC 2.7.7.1; HMM-score: 15)
- TheSEED:
- PFAM: no clan definedSAM_adeno_trans; S-adenosyl-l-methionine hydroxide adenosyltransferase (PF01887; HMM-score: 232.3)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.13
- Ymax_pos: 21
- Cmax: 0.132
- Cmax_pos: 21
- Smax: 0.244
- Smax_pos: 19
- Smean: 0.114
- D: 0.124
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYWPKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSRLPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGSIDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGEPLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS14555 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]