NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS14555 [old locus tag: SAUSA300_2619 ]
• pan locus tag^?: SAUPAN006442000
• symbol: SAUSA300_RS14555
• pan gene symbol^?: —
• synonym:
• product: DNA-directed RNA polymerase subunit delta

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS14555 [old locus tag: SAUSA300_2619 ]
• symbol: SAUSA300_RS14555
• product: DNA-directed RNA polymerase subunit delta
• replicon: chromosome
• strand: -
• coordinates: 2845802..2846650
• length: 849
• essential: unknown

⊟Accession numbers

• Location: NC_007793 (2845802..2846650) NCBI
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  
  ATGGGAAATTATTTGGTATTGCAATCAGATTTTGGACTTAGTGATGGCGCTGTAAGTGCA
  ATGTATGGAGTTGCATATACTGTAAGTGATGATATACGTGTTGAAAACTTAACGCATGAT
  ATACCACCGTATGACATTTGGGTAGCGTCATATCGTTTATATCAAACTGTAAAATACTGG
  CCTAAAGGCACAGTTTTTGTATCAGTGGTAGACCCGGGTGTAGGTAGTGATAGGCGGAGC
  ATTGCTTGCTTAACATATTCAGGTCATTACATTATTACACCTGATAATGGTTCTTTAAGT
  CATATTAAACATTACGAAGGTATTAAAAAAGTTATCGAAATTGATGAAGTGAAAAGCCGA
  TTGCCTCATTCGGAAGAAAGTCATACTTTTCATGGTAGAGATGTTTATGCATACAATGGT
  GCGAGATTAGCTGCAAATAAGATAGCGTTTGAACGTCTCGGTCAGGCAATTAATGTTGAT
  AGTATTGAGGCATTAGAAATAAGAGAAGTGACAAAAAATGAGGATTCTGTTACAGGAAGC
  ATTGATATTTTAGATATCAGATTTGGGTCATTATGGACAAATATTCCATTGGCATTCTTA
  AAATCCTTGGAAATTGTTCATGGTAATAATTTGGTGGTAACAATTTATCATCAAGATAAG
  AAAGTCTATCAAAATATTATTAAATTTGCGCGATCGTTTGCAGATGTTAATGTGGGTGAA
  CCTCTTGTGTATGTTAACTCGCTAGTAAATATTGGTGTAGCAGTCAATCAAGACTCATTT
  TCAGATTTATATCATATTGGTACTGGAAATGATTGGACGATTCATTTATCTAAAGCACCA
  TCAATATAA
  60
  120
  180
  240
  300
  360
  420
  480
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  840
  849
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS14555 [old locus tag: SAUSA300_2619 ]
• symbol: SAUSA300_RS14555
• description: DNA-directed RNA polymerase subunit delta
• length: 282
• theoretical pI: 5.93783
• theoretical MW: 31439.2
• GRAVY: -0.0819149

⊟Function

• reaction:
• TIGRFAM:
  Cellular processesCellular processesBiosynthesis of natural productsadenosyl-fluoride synthase (TIGR04507; EC 2.5.1.63; HMM-score: 79.5)
  and 1 more
  MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersPyridine nucleotidesnicotinamide-nucleotide adenylyltransferase (TIGR01527; EC 2.7.7.1; HMM-score: 15)
• TheSEED:
• PFAM:
  no clan definedSAM_adeno_trans; S-adenosyl-l-methionine hydroxide adenosyltransferase (PF01887; HMM-score: 232.3)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.13
  • Ymax_pos: 21
  • Cmax: 0.132
  • Cmax_pos: 21
  • Smax: 0.244
  • Smax_pos: 19
  • Smean: 0.114
  • D: 0.124
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446451068 NCBI
• RefSeq: WP_000528923 NCBI
• UniProt:

⊟Protein sequence

• MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYWPKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSRLPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGSIDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGEPLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SAUSA300_RS14555 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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