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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS15350
  • pan locus tag?:
  • symbol: SAUSA300_RS15350
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_RS15350
  • symbol: SAUSA300_RS15350
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1591981..1593135
  • length: 1155
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_007793 (1591981..1593135) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGATGGGCGAATTCCAATAAATGTTTGGACAGGAGATTCGATTGCACGTTCTGGAAGA
    GGAACTTTAATTAAACTTAATTTAGAAAATCTTGATGCGTTGAGTAAACTGATTACTGGT
    GAAACAAGTGGTATGTTAGCAGAATGCGTAATCTTTTTAAATGAAAGTTTTAACATCTCA
    GAAAATGAAAATAAAAATTTTGCAGATAGAAAGAAACAATTATCAGAAGGATTTAAGGAT
    AAGATTAACTTATTTCAGTTAGAAGAAATGGAAAGAACTTTAATTAGTAAAATAAACTCA
    CTTGAAGAAGTTGCAGATGAAACAATAGAAAGTATTAGTGCTGTTAAACACTTATTACCT
    GATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCT
    TTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATA
    GATCACGACTTCAGAGATGGAGTATCTGAAGAAATGATGAAACATTTGAAAGTAGTGAAA
    CAGAATATAGACCAAATAAAAAATCAAAATGATATTTATGGTAGGCAAATTGCAGATATT
    AGAAGTATTATGAAACAACAAGATGCAACAATTTTAGATGGAAATTTTCAAATTAATTGT
    AGCGGCGAAAATATGGTACAGGGTCTAGTTATACCTTCTAATTATTTAGGAAGAAAAATG
    AAAATATTAAAAGACCATATCGATGATGGTATTAAAAAAATAGCAGACTATGTTCAAGGT
    ATATATGATGAATATGCATCGAAAATTGTCGATGTAATAAAATATTTGATTAATACAATT
    CCCAAAATACGTAAGAATTTAAGACATGCAATTGAAATGTTAAATGTAAAAAAGAAAGAA
    TTTTTGTCCCTGATTCCTAATGTAACTTGTAATTATATTAAAACTAAATTAGAAGAATTA
    GATAATACTTTAGGCAAATGGGAGCCTTTTCTTAATGATTTAAAAGCAGTGTCACCAATT
    TTAGATAACCATTTAGATGATATTGTTAAGAACATGAAGCCTTTGATTGTACAAATGATA
    TTTGAACCATCACATTATGATGATATGTTTATTTCAAGAAAAGCTTTAACGCCAGTGTTC
    TCAAGCGTTTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1155

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_RS15350
  • symbol: SAUSA300_RS15350
  • description: hypothetical protein
  • length: 384
  • theoretical pI: 5.37373
  • theoretical MW: 44028.6
  • GRAVY: -0.273958

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesSporulation and germinationsporulation integral membrane protein YtvI (TIGR02872; HMM-score: 14.6)
    MetabolismPurines, pyrimidines, nucleosides, and nucleotidesNucleotide and nucleoside interconversionsputative dGTPase (TIGR01353; EC 3.1.5.1; HMM-score: 13.8)
  • TheSEED:
  • PFAM:
    no clan definedBaculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 27.8)
    Apolipoprotein; Apolipoprotein A1/A4/E domain (PF01442; HMM-score: 22.3)
    Carbpep_Y_N; Carboxypeptidase Y pro-peptide (PF05388; HMM-score: 18.4)
    TerB_C; TerB-C domain (PF15615; HMM-score: 13.7)
    DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 12.2)
    post-AAA (CL0604) Rep_fac_C; Replication factor C C-terminal domain (PF08542; HMM-score: 11.6)
    no clan definedMt_ATP-synt_D; ATP synthase D chain, mitochondrial (ATP5H) (PF05873; HMM-score: 11.5)
    VPS23_C (CL0596) Mod_r; Modifier of rudimentary (Mod(r)) protein (PF07200; HMM-score: 11.3)
    no clan definedDict-STAT-coil; Dictyostelium STAT, coiled coil (PF09267; HMM-score: 8.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.131
    • Ymax_pos: 69
    • Cmax: 0.136
    • Cmax_pos: 69
    • Smax: 0.203
    • Smax_pos: 46
    • Smean: 0.112
    • D: 0.124
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_001548909 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MDGRIPINVWTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFADRKKQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKERINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIDQIKNQNDIYGRQIADIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDDGIKKIADYVQGIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVTCNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMIFEPSHYDDMFISRKALTPVFSSVL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SAUSA300_RS15350 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]