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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 23-MAY-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_pUSA030031 [new locus tag: SAUSA300_RS14895 ]
  • pan locus tag?:
  • symbol: SAUSA300_pUSA030031
  • pan gene symbol?:
  • synonym:
  • product: LtrC-like protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_pUSA030031 [new locus tag: SAUSA300_RS14895 ]
  • symbol: SAUSA300_pUSA030031
  • product: LtrC-like protein
  • replicon: pUSA03
  • strand: +
  • coordinates: 30381..32105
  • length: 1725
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGCTTATTCAAAAGGAAATTATAAAAAGAAAAAAATAGATTCAATAATAGAAGAATTG
    AATAATAAGCTAGATGACTTCAAAAACAATGACAAAACCTATAAGGAATTTTTAGATACT
    ACAGCGAAATTTCACAACTATTCAATTAATAATATTATTCTAATTGCTGGCCAAAATCCA
    GAGGCTACAGCTGTAGCTGGTTATAAAGCATGGAAAAATAAATTTGATAGACAAGTGCAA
    AAAGGTGCAAAAAGTATGAATATAATTGCCCCTATTGTACAAAAACGAAATGTAGAAATT
    AAAGATGATAACGGTAATATAGTACGTGATAATAACGGTAATCCTAAAACTGAACGAAAA
    CCCGTAATTACTGGATATAGAGCGCATAATGTGTTTGATGTGGCAGATACGAAAGGCAAG
    CCTTTAATAACAGCAAAAGACCTAATAAAAACCGAATTTGAAAACTCTAACGACTATAAA
    GACTTATATAATGAATTTAAAGATTATATTAATGAAGAATTAACACCTAGTGTAGAGGAA
    AAACATTTTCTTGATGATCCTACTTTATCTAATGGCGCTAAAGGTTATTATAGTCCTAAA
    TCTGATGAAATTGTAATCTCTGATGATTTGTCATATGATATGCGCTTTAAAACTTTAATA
    CATGAATATGCACACTCTCAATTACACAATAATGATATAGGTAAAACGCAAATATCTGAA
    CATAGTAGATCATTAAAAGAAATCGAGGCTGAAAGTTCTGCTTATGTAGTAGCTAATTAT
    TACGGTTTAGACACTAGCGATTATTCTTTAGGTTATTTAAGTGGCTGGGGGCATAATATA
    AGTGATGATGAATTAAAAGCCCACATAAAAAATATACATTCGTTCGCAAAAACTACAATT
    GAAGAAATAAATTCATTGCCAGAGTTTTCTCAATATATAGATAAAAAATTAGAATCAGAA
    ATGAACAAAGATGTATATAAAGACCTTTCAACAATGATAGATACCAATCTAAAAAATGGT
    TTTGATAAAATAACTATTATCAAAGGTAATTTAGTTAATGATTATGGACTTAATGAAATT
    TCTGAGAATAGTTATGAAAATGATGATTTTAAAGTGAATATTGATTACAAAGGATTTAAT
    ACTAATAATTCGCAAGATCAAGCTAAAATTGAGTTAATTAATAAGCATGATGATTCATTG
    AATAGAGATTACAACTTCACGCAAACTTATAACCGAAATGTAATTAATAACACCACAACT
    ATTTTTGTACAAGATGATGATAATGAAGATAAAAACAAAAAATATATCCATGAACGAGAT
    ATAGACGGTAATATATTAGAAGAAAAACATAAATTAAGCCCACAAGATGAAATAGTATCA
    TTTGAAAACTTTGTAAATAAATCAGTTGAAGAAAATGGCCTAAAAGATACATTACGCCAA
    TTTGTAAGTAATGGTGTATTAATGGGCTATGAATTAAATGTTGATAATATTGATAATACA
    AATGAAACTTACTTTTCAATGAATAAAAATCAACAAAATGGCCAACGATCAAATATGACT
    GCTAAATTAGAACATGATACTAACGAAAATGTTTATATAGATTTTAAAATTAAAAATTCA
    GCTGGTATTAAAAACATATCCTATACTGAAAGTAATGAAGAATTTAATAAAGATGAACAG
    AATAAAGAAATTGAAAACAAACAAGAAGAAGAAATTGATATATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1725

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_pUSA030031 [new locus tag: SAUSA300_RS14895 ]
  • symbol: SAUSA300_pUSA030031
  • description: LtrC-like protein
  • length: 574
  • theoretical pI: 4.70425
  • theoretical MW: 66283.4
  • GRAVY: -0.970209

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    LtrC-like protein 
  • PFAM:
    no clan definedDUF1738; Domain of unknown function (DUF1738) (PF08401; HMM-score: 10)
    PDDEXK (CL0236) RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain (PF03871; HMM-score: 8.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.157
    • Ymax_pos: 11
    • Cmax: 0.117
    • Cmax_pos: 65
    • Smax: 0.418
    • Smax_pos: 1
    • Smean: 0.205
    • D: 0.176
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MAYSKGNYKKKKIDSIIEELNNKLDDFKNNDKTYKEFLDTTAKFHNYSINNIILIAGQNPEATAVAGYKAWKNKFDRQVQKGAKSMNIIAPIVQKRNVEIKDDNGNIVRDNNGNPKTERKPVITGYRAHNVFDVADTKGKPLITAKDLIKTEFENSNDYKDLYNEFKDYINEELTPSVEEKHFLDDPTLSNGAKGYYSPKSDEIVISDDLSYDMRFKTLIHEYAHSQLHNNDIGKTQISEHSRSLKEIEAESSAYVVANYYGLDTSDYSLGYLSGWGHNISDDELKAHIKNIHSFAKTTIEEINSLPEFSQYIDKKLESEMNKDVYKDLSTMIDTNLKNGFDKITIIKGNLVNDYGLNEISENSYENDDFKVNIDYKGFNTNNSQDQAKIELINKHDDSLNRDYNFTQTYNRNVINNTTTIFVQDDDNEDKNKKYIHERDIDGNILEEKHKLSPQDEIVSFENFVNKSVEENGLKDTLRQFVSNGVLMGYELNVDNIDNTNETYFSMNKNQQNGQRSNMTAKLEHDTNENVYIDFKIKNSAGIKNISYTESNEEFNKDEQNKEIENKQEEEIDI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • MicrobesOnline: SAUSA300_pUSA030031 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]