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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 23-MAY-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_pUSA030033 [new locus tag: SAUSA300_RS14905 ]
  • pan locus tag?:
  • symbol: SAUSA300_pUSA030033
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_pUSA030033 [new locus tag: SAUSA300_RS14905 ]
  • symbol: SAUSA300_pUSA030033
  • product: hypothetical protein
  • replicon: pUSA03
  • strand: +
  • coordinates: 34288..34620
  • length: 333
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    TTGAATCTGTCAAACGAAAAGGTTATAATTAAATTAATAAAAAATATGGAGGTTTTATTT
    ATGGCTGATATTCAAAAAATGTTAGAACAAAAAGAAAAACTTCAAGAAAAAATTAAAGAA
    GAAAAGAAAAAAGAATATGAAAAATTTGGAAGATGGTTCTTCAATAAATTTAAAGTAAAT
    AGATCAGCAGACGCAAAGAAAATTATAAATAAAAATTTGCTTAATATTGAAGATACTAAA
    GAACACAATTTAGAAAGAAATGAAATTATAGAAGAAACTAAAAATTCCAATGAAGAAAAC
    AAAGAAATAAATGAAATAAACCACAATATTTAA
    60
    120
    180
    240
    300
    333

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_pUSA030033 [new locus tag: SAUSA300_RS14905 ]
  • symbol: SAUSA300_pUSA030033
  • description: hypothetical protein
  • length: 110
  • theoretical pI: 8.92683
  • theoretical MW: 13350.3
  • GRAVY: -1.08455

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Arginine Biosynthesis extended hypothetical protein 
  • PFAM:
    no clan definedSp38; Zona-pellucida-binding protein (Sp38) (PF07354; HMM-score: 11)
    ABC-2 (CL0181) ABC_export; Putative ABC exporter (PF16962; HMM-score: 7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.149
    • Ymax_pos: 37
    • Cmax: 0.112
    • Cmax_pos: 22
    • Smax: 0.263
    • Smax_pos: 4
    • Smean: 0.187
    • D: 0.164
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNLSNEKVIIKLIKNMEVLFMADIQKMLEQKEKLQEKIKEEKKKEYEKFGRWFFNKFKVNRSADAKKIINKNLLNIEDTKEHNLERNEIIEETKNSNEENKEINEINHNI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • MicrobesOnline: SAUSA300_pUSA030033 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]