NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS03240 [old locus tag: SA0560 ]
- pan locus tag?: SAUPAN002468000
- symbol: SA_RS03240
- pan gene symbol?: —
- synonym:
- product: HD domain-containing protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS03240 [old locus tag: SA0560 ]
- symbol: SA_RS03240
- product: HD domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 653214..654509
- length: 1296
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (653214..654509) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1261ATGACTAACGCATATGTAGATTTAAAATTAGTAGAAGAAAAAGTTTTTAAAGATCCGATA
CATCGATATATTCATGTTGAAGATCAATTGATATGGGATTTAATTAAAACTAAGGAATTC
CAAAGGTTACGTCGAATTAGACAACTAGGAACACTGTACCTATCTTTTCACACAGCAGAA
CATAGTCGCTTTGGACATTCTTTAGGTGTGTATGAAATAGTTAGACGATTAATTGATGAG
TCATTTATTGGTCATGATGCATGGGACAATAAAGATAGACCGTTGGCATTATGTGCTGCA
TTATTACATGATTTAGGACATGGTCCATTTTCACATAGTTTTGAAAAAATATTTAATACA
GACCATGAAGCATACACACAAGCGATTATTACTGGAGATACTGAGGTGAATGCTGTATTA
CGTAAAGTGTCGCCTGAGTTTCCAAGAGAAGTTGCGGAAGTAATTAATAAAACGCATCAT
AATAAATTGGTCATTTCGATGATTTCGTCACAAATCGATGCGGATAGAATGGATTATTTA
CAACGTGATGCGTATTTCACAGGTGTATCATATGGTGCTTTTGATATGGAGCGTATTTTA
AGATTAATGCGACCTTCTAAAGATGAAGTACTAATCAAAGAAAGTGGTATGCATGCAGTT
GAAAACTTTATTATGAGTCGTTATCAAATGTATTGGCAAATTTACTTCCACCCAGTTAGT
CGTGGTGGAGAAGTGCTGCTTAATAATTGTTTGAAACGCGCAAAACAGCTTTATAATGAA
GGCTATGAATTTAAGTTGCATCCACATGATTTTATTCCATTTTTTGAAGAGACAGTTACG
ATTGAACAATATGTTGAACTCGATGAAGCGGTAGTTACGTATTATTTGGAAAAATGGACA
AAAGAAGATGATGCCATTTTAAGTGATTTAGCAAGTCGATTTATTAATCGAGACTTATTT
AAATATATTCCATTTGATGGCTCAATTATTACAATATCAGAACTGCAAGAACTGTTTGAA
GCAGGTGGTATTAATCCAGATTATTATTTTGTGAGTGAAGCATTTTCGGATTTGCCATAT
GACTATGATCGACCGGGGTCAAATCGCAAACCGATTCATTTATTAAGACAAGATGGTACG
ATTAGAGAAATAAGCAATCAATCATTAGTCATTCATAGTATTACAGGCATTAATCGCCAA
GACTATAAATTATATTATCCTAGAGAAATGGTTGCAAAGATTAAAGATAAGACAATTAGA
GAAGCTATTGAAAATTTGATTAATGAGCTTAATTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS03240 [old locus tag: SA0560 ]
- symbol: SA_RS03240
- description: HD domain-containing protein
- length: 431
- theoretical pI: 5.81147
- theoretical MW: 50611.1
- GRAVY: -0.391879
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotidesNucleotide and nucleoside interconversionsputative dGTPase (TIGR01353; EC 3.1.5.1; HMM-score: 28.2)HDIG domain (TIGR00277; HMM-score: 12.2)
- TheSEED:
- PFAM: HD_PDEase (CL0237) HD; HD domain (PF01966; HMM-score: 57.9)DprA (CL0349) DNA_processg_A; DNA recombination-mediator protein A (PF02481; HMM-score: 11.7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.095
- Ymax_pos: 70
- Cmax: 0.107
- Cmax_pos: 23
- Smax: 0.097
- Smax_pos: 3
- Smean: 0.059
- D: 0.081
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVSPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS03240 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]