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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03240 [old locus tag: SA0560 ]
  • pan locus tag?: SAUPAN002468000
  • symbol: SA_RS03240
  • pan gene symbol?: —
  • synonym:
  • product: HD domain-containing protein

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS03240 [old locus tag: SA0560 ]
  • symbol: SA_RS03240
  • product: HD domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 653214..654509
  • length: 1296
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_002745 (653214..654509) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGACTAACGCATATGTAGATTTAAAATTAGTAGAAGAAAAAGTTTTTAAAGATCCGATA
    CATCGATATATTCATGTTGAAGATCAATTGATATGGGATTTAATTAAAACTAAGGAATTC
    CAAAGGTTACGTCGAATTAGACAACTAGGAACACTGTACCTATCTTTTCACACAGCAGAA
    CATAGTCGCTTTGGACATTCTTTAGGTGTGTATGAAATAGTTAGACGATTAATTGATGAG
    TCATTTATTGGTCATGATGCATGGGACAATAAAGATAGACCGTTGGCATTATGTGCTGCA
    TTATTACATGATTTAGGACATGGTCCATTTTCACATAGTTTTGAAAAAATATTTAATACA
    GACCATGAAGCATACACACAAGCGATTATTACTGGAGATACTGAGGTGAATGCTGTATTA
    CGTAAAGTGTCGCCTGAGTTTCCAAGAGAAGTTGCGGAAGTAATTAATAAAACGCATCAT
    AATAAATTGGTCATTTCGATGATTTCGTCACAAATCGATGCGGATAGAATGGATTATTTA
    CAACGTGATGCGTATTTCACAGGTGTATCATATGGTGCTTTTGATATGGAGCGTATTTTA
    AGATTAATGCGACCTTCTAAAGATGAAGTACTAATCAAAGAAAGTGGTATGCATGCAGTT
    GAAAACTTTATTATGAGTCGTTATCAAATGTATTGGCAAATTTACTTCCACCCAGTTAGT
    CGTGGTGGAGAAGTGCTGCTTAATAATTGTTTGAAACGCGCAAAACAGCTTTATAATGAA
    GGCTATGAATTTAAGTTGCATCCACATGATTTTATTCCATTTTTTGAAGAGACAGTTACG
    ATTGAACAATATGTTGAACTCGATGAAGCGGTAGTTACGTATTATTTGGAAAAATGGACA
    AAAGAAGATGATGCCATTTTAAGTGATTTAGCAAGTCGATTTATTAATCGAGACTTATTT
    AAATATATTCCATTTGATGGCTCAATTATTACAATATCAGAACTGCAAGAACTGTTTGAA
    GCAGGTGGTATTAATCCAGATTATTATTTTGTGAGTGAAGCATTTTCGGATTTGCCATAT
    GACTATGATCGACCGGGGTCAAATCGCAAACCGATTCATTTATTAAGACAAGATGGTACG
    ATTAGAGAAATAAGCAATCAATCATTAGTCATTCATAGTATTACAGGCATTAATCGCCAA
    GACTATAAATTATATTATCCTAGAGAAATGGTTGCAAAGATTAAAGATAAGACAATTAGA
    GAAGCTATTGAAAATTTGATTAATGAGCTTAATTAA
    60
    120
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    1020
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    1140
    1200
    1260
    1296

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SA_RS03240 [old locus tag: SA0560 ]
  • symbol: SA_RS03240
  • description: HD domain-containing protein
  • length: 431
  • theoretical pI: 5.81147
  • theoretical MW: 50611.1
  • GRAVY: -0.391879

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismPurines, pyrimidines, nucleosides, and nucleotidesNucleotide and nucleoside interconversionsputative dGTPase (TIGR01353; EC 3.1.5.1; HMM-score: 28.2)
    HDIG domain (TIGR00277; HMM-score: 12.2)
  • TheSEED:
  • PFAM:
    HD_PDEase (CL0237) HD; HD domain (PF01966; HMM-score: 57.9)
    DprA (CL0349) DNA_processg_A; DNA recombination-mediator protein A (PF02481; HMM-score: 11.7)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.095
    • Ymax_pos: 70
    • Cmax: 0.107
    • Cmax_pos: 23
    • Smax: 0.097
    • Smax_pos: 3
    • Smean: 0.059
    • D: 0.081
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 446102379 NCBI
  • RefSeq: WP_000180234 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVSPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SA_RS03240 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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