NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS07770 [old locus tag: SA1373 ]
- pan locus tag?: SAUPAN004122000
- symbol: SA_RS07770
- pan gene symbol?: comGB
- synonym:
- product: competence protein ComGB
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS07770 [old locus tag: SA1373 ]
- symbol: SA_RS07770
- product: competence protein ComGB
- replicon: chromosome
- strand: -
- coordinates: 1579157..1580227
- length: 1071
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (1579157..1580227) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1021GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAG
GCCCAACAAATCGATTTACTTTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTG
TATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATAAAAATAAGCAATTAGGTACC
ACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGAC
GTTCTAGAAGAAACCGTAAATTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTA
AAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTATTGCTATGATTATTATATTA
AACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATG
CTCATAATAGTATCTATGTTGGCTATTATTATGAAATTAATTTATAACAATTTAAATATG
CTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATATCAGGCTATTTCCAATTATTT
AAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAA
TACTTATTAACTTATTCAGAAATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAA
TGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTGAAAAGAGAGGGAAGCTAGAA
GTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATT
TATTTAGTAATTATGTTACCAATGTTTCAAATGATGCAAAGTATAAAATAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS07770 [old locus tag: SA1373 ]
- symbol: SA_RS07770
- description: competence protein ComGB
- length: 356
- theoretical pI: 10.0622
- theoretical MW: 41447.6
- GRAVY: 0.401124
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Protein fateProtein and peptide secretion and traffickingtype II secretion system protein F (TIGR02120; HMM-score: 95.4)
- TheSEED:
- PFAM: no clan definedT2SSF; Type II secretion system (T2SS), protein F (PF00482; HMM-score: 81.2)E1-E2_ATPase; E1-E2 ATPase (PF00122; HMM-score: 9.3)DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 6.1)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.187
- Ymax_pos: 13
- Cmax: 0.13
- Cmax_pos: 22
- Smax: 0.441
- Smax_pos: 4
- Smean: 0.351
- D: 0.251
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIGYSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLSSFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQSIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIKQTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS07770 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]