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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08345 [old locus tag: SA1483 ]
  • pan locus tag?: SAUPAN004270000
  • symbol: SA_RS08345
  • pan gene symbol?: tnpB
  • synonym:
  • product: transposase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS08345 [old locus tag: SA1483 ]
  • symbol: SA_RS08345
  • product: transposase
  • replicon: chromosome
  • strand: -
  • coordinates: 1688038..1689930
  • length: 1893
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (1688038..1689930) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
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    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAATGCTTCTAGTAAAAGGAAAATTATTAGTCAGAGTGAGATTAGCAAAAAAATAGCT
    GTAATGAATGAAGAAATGCAGGGGTTTTGGGCTAATAATAGTTGGGATATAAGAAAATGT
    CCACATCCTTCTGCCATAGAATTAAGTAAGAATCCTGCTTTAAGGAATCGTTGGGTTCGT
    TTTGAACGTGTTAAAAATCTGTGGTTAAGAACAGAATTGAAATATTTTTATTTTTACCAT
    TTAAACAATGGAATATGGAATGCAAAAACTGTCTGGATTAGAAAAGGAACAGTAATTAAT
    AAAATGTTAGATTTCTTAGATTTAAAGTATCCTAGCATTACTTCAATTACTGAAGTTCCT
    ATTGAAAAAGCAATGACGGAGTATAGAACTTATTTGACAAAACGGGGTGTTAGAATTACC
    ACTACTAATTATAAGATTACTGCTAATCAAGAAAAAACACCTGTAAAAGCTAATTCCTAC
    TATGTTACTAATCTAAAACAATTTATGGAGTTTTATGAGAACTTTTATTTTGATGGAGAG
    GAGTGGGATAAAGACGTTTGGGATAGACGTAACTTACCTTTGCCAGATGATAAGGTTAAC
    CCAACACAATATGAATATACAATTAACTTTAAAGGGTTTCGGAATACATATTTTAAACAA
    CTTGTAAAAAGATATTGTAAGTTGAGATTGAACGTGGATAGCTTTTCCTATGTAAGTGAT
    ATTGCCCAAAGACTTAAAGAGTTCTTTAATTTTCTGGACATGAAATTTAAACAAGTTCAG
    AGAGTACACCAATTAACGAGAGTGGAAATTGAAGCATATTTAAGTGAACTAAACATGATG
    GGAATAAAACCTAGTACAATAACTGGGAGGATCTCTATATTGGAAGGACTATTTAGTACC
    CTTCTTAGGCTAGAATGGGATGATGTTCCTTCCAAAATATTAATTTATTCTGAGGACTAT
    CCGAAAATACCAAGAGCAAAACCACGCTTTATAGATGAATTCGTCCTAGAGCAATTGAAC
    AGTCATCTTGATAAATTACCCGAATATATAGCTACGATGACTATGATTGTTCAAGAATGT
    GGAATGAGGATAAGTGAATTGTGCACCTTGAAAAAAGGCTGTCTATTAGAGGACAAAGAT
    GGAGATTTCTTTTTAAAGTATTATCAATGGAAAATGAAAAAGGAGCATATAGTTCCAATA
    TCTAAAGAGGTAGCTTTACTTATTAAAGTTCGGGAAGATAAAGTTTCAGAGGAATTTCCA
    GATAGTGAATACCTCTTTCCAAGAAAAGATGGATCGCCATTAAAACAAGAAACATTTAGA
    GGTGAGTTAAATAAATTAGCTTATGAGCAAAATATAGTGGATAAATCAGGTGAGATTTAT
    AGATTCCATGCCCATGCCTTTCGCCATACAGTAGGAACAAGAATGATTAACAACGGGATG
    CCCCAGCATATTGTGCAGAAATTTTTGGGGCATGAAAGCCCAGAAATGACAAGCAGATAC
    GCTCATATCTTTGATGAAACTCTAAAAAATGAATTTACTAAATTTCAGGAAAAACTGGTT
    ACCAATAATGGAGATGTGCTTGATCTAGATGAAGATAATGAAGTCGATGATGTAGAGCTT
    CAATGGTTCAAGAAAAATATAAATGCACAAGTGCTTCCAAATGGTTATTGTAGATTGCCA
    GTAGTAGCAGGTGGTTGTCCACATGCGAATGCATGCTTAGATTGCACTCACTTCTGTACC
    AGTAAGCAATTCTTACCACAGCACGAAGAACAGTTAGAGCGTACAGAAGAGTTATTAGCC
    ATAGCTAAGGATAAACAATGGCAAAGACAAGTAGAGACTAATAGCCGTGTTAAAGAGCGT
    TTAGAACAAATCATTGGAAGTTTGACGGGGTAA
    60
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    1440
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    1560
    1620
    1680
    1740
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    1860
    1893

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS08345 [old locus tag: SA1483 ]
  • symbol: SA_RS08345
  • description: transposase
  • length: 630
  • theoretical pI: 8.35267
  • theoretical MW: 74438.9
  • GRAVY: -0.568889

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairtyrosine recombinase XerC (TIGR02224; HMM-score: 95.1)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairtyrosine recombinase XerD (TIGR02225; HMM-score: 77.8)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairintegron integrase (TIGR02249; HMM-score: 29.9)
    Genetic information processingMobile and extrachromosomal element functionsOtherintegron integrase (TIGR02249; HMM-score: 29.9)
  • TheSEED:
  • PFAM:
    DNA-mend (CL0382) Phage_integrase; Phage integrase family (PF00589; HMM-score: 151.8)
    l-integrase_N (CL0469) Phage_int_SAM_4; Phage integrase, N-terminal SAM-like domain (PF13495; HMM-score: 27.6)
    Phage_int_SAM_1; Phage integrase, N-terminal SAM-like domain (PF02899; HMM-score: 21.6)
    DNA-mend (CL0382) Phage_integr_3; Archaeal phage integrase (PF16795; HMM-score: 17.5)
    l-integrase_N (CL0469) Phage_int_SAM_2; Phage integrase, N-terminal (PF12834; HMM-score: 13.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.172
    • Ymax_pos: 12
    • Cmax: 0.113
    • Cmax_pos: 32
    • Smax: 0.368
    • Smax_pos: 18
    • Smean: 0.291
    • D: 0.218
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 486220533 NCBI
  • RefSeq: WP_001557544 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNASSKRKIISQSEISKKIAVMNEEMQGFWANNSWDIRKCPHPSAIELSKNPALRNRWVRFERVKNLWLRTELKYFYFYHLNNGIWNAKTVWIRKGTVINKMLDFLDLKYPSITSITEVPIEKAMTEYRTYLTKRGVRITTTNYKITANQEKTPVKANSYYVTNLKQFMEFYENFYFDGEEWDKDVWDRRNLPLPDDKVNPTQYEYTINFKGFRNTYFKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILEGLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDEFVLEQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKFQEKLVTNNGDVLDLDEDNEVDDVELQWFKKNINAQVLPNGYCRLPVVAGGCPHANACLDCTHFCTSKQFLPQHEEQLERTEELLAIAKDKQWQRQVETNSRVKERLEQIIGSLTG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS08345 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]