NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS08475 [old locus tag: SA1505 ]
- pan locus tag?: SAUPAN004301000
- symbol: SA_RS08475
- pan gene symbol?: lysP
- synonym:
- product: gamma-aminobutyrate permease
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS08475 [old locus tag: SA1505 ]
- symbol: SA_RS08475
- product: gamma-aminobutyrate permease
- replicon: chromosome
- strand: -
- coordinates: 1712104..1713597
- length: 1494
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (1712104..1713597) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1441ATGTCAAAAGTTCAAAATGAAAGTAACAATGTTGTCAAAAGGGGACTTAAAGATCGTCAT
ATTTCTATGATTGCGATTGGGGGTTGTATTGGTACAGGTTTATTTGTAACTTCTGGTGGA
GCAATTCATGATGCAGGTGCTTTGGGTGCATTAATAGGATACGCAATTATCGGAATAATG
GTATTTTTCTTAATGACGTCACTTGGTGAAATGGCTACGTATTTACCAGTATCAGGTTCA
TTTAGTACATATGCTACAAGATTTGTTGATCCATCTTTAGGGTTTGCGCTTGGTTGGAAC
TATTGGTTTAACTGGGTAGTAACTGTAGCAGCAGATATTACGATTGCAGCACAAGTCATT
CAATATTGGACACCATTGCAAGGCATACCCGCTTGGGCATGGAGTGCGTTGTTTTTAGTT
ATAATTTTTAGTCTGAATTCGTTATCAGTTCGCGTCTATGGTGAAAGTGAATACTGGTTG
GCATTGATAAAAGTGATTACAGTTATTGTTTTCATTGCAATTGGTTTATTAACGATTGTA
GGAATCATGGGTGGTCATGTTGTAGGATTTGAAATATTTAATAAAGGTGAAGGTCCTATT
CTTGGTGGCAACTTAGGAGGAAGTTTGTTATCAATTCTAGGTGTATTCTTAATCGCTGGT
TTCTCATTCCAAGGTACTGAGTTAATTGGTATTACGGCTGGTGAATCAGAAAATCCTGAA
CGTGCTGTGCCGAAAGCAATTAAACAAGTATTCTGGAGAATTTTATTATTTTACATTTTA
GCCATTTTTGTTATCGGTATGTTAATTCCTTATGATAGTAGTGCATTAATGGGTGGTAGT
GATAATGTAGCAACGTCTCCATTCACATTAGTGTTTAAAAATGCTGGATTTGCGTTTGCA
GCATCATTTATGAATGCAGTCATTTTAACGTCTGTGTTATCAGCAGGTAACTCAGGTATG
TATGCTTCAACCCGAATGCTATATTCAATGAGTAAAGATAAATTAGCGTTTGAAGCATTT
GGTAAAACAAATAAAAACGGTGTGCCATATATGTCGTTACTCGTTACAGCAATCATTGTA
GTGATTATTTTCGTATTACAAAGCCTTACAAAAGGTGCATACGAATATATCGTTGCAGCA
AGTGGTTTAACTGGTTTTATTGCTTGGGTAGGTATAGCAGTAAGTCATTATCGATTTAGA
AGAGCATTTGATAAACAAAATTATGACAAATCTAAATTAAAATATACTGCTAAATTATTC
CCATTCGGACCATTATTTGCTGGCTTTTTATGTATTGTAGTAATTATTGGTCAAGATGTT
GACTTTATTAAAACAGGAGATTTTAATTTTAGTCGCTTCTTAATTACGTATATGGGAATT
CCAGTATTTTTAGCATTCTTTATTTATCATAAGCTTCGATATAAAACGAAAAAAATTCCA
TTAGAACAAGTAGATTTACGTCAAGACGTGTCAATGGATGAAATAAAAGGTTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS08475 [old locus tag: SA1505 ]
- symbol: SA_RS08475
- description: gamma-aminobutyrate permease
- length: 497
- theoretical pI: 9.51176
- theoretical MW: 54232.5
- GRAVY: 0.655936
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Transport and binding proteinsAmino acids, peptides and aminesamino acid permease (yeast) (TIGR00913; HMM-score: 468.2)Transport and binding proteinsAmino acids, peptides and aminesGABA permease (TIGR01773; HMM-score: 308.9)Transport and binding proteinsAmino acids, peptides and aminesamino acid transporter (TIGR00909; HMM-score: 96.4)Transport and binding proteinsAmino acids, peptides and aminestransporter, basic amino acid/polyamine antiporter (APA) family (TIGR00905; HMM-score: 69.5)Transport and binding proteinsAmino acids, peptides and aminesarginine-ornithine antiporter (TIGR03810; HMM-score: 55.8)Transport and binding proteinsAmino acids, peptides and aminesethanolamine permease (TIGR00908; HMM-score: 52.9)Transport and binding proteinsAmino acids, peptides and aminesL-type amino acid transporter (TIGR00911; HMM-score: 52.9)Transport and binding proteinsAmino acids, peptides and aminescationic amino acid transport permease (TIGR00906; HMM-score: 51.5)histidine-histamine antiporter (TIGR04298; HMM-score: 25.9)putative glutamate/gamma-aminobutyrate antiporter (TIGR03813; HMM-score: 14.8)Protein fateProtein and peptide secretion and traffickingtype VII secretion protein EssC (TIGR03928; HMM-score: 12)
- TheSEED:
- PFAM: APC (CL0062) AA_permease; Amino acid permease (PF00324; HMM-score: 446.5)AA_permease_2; Amino acid permease (PF13520; HMM-score: 159.8)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 12
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.179
- Ymax_pos: 42
- Cmax: 0.152
- Cmax_pos: 48
- Smax: 0.369
- Smax_pos: 27
- Smean: 0.218
- D: 0.194
- predicted transmembrane helices (TMHMM): 12
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MSKVQNESNNVVKRGLKDRHISMIAIGGCIGTGLFVTSGGAIHDAGALGALIGYAIIGIMVFFLMTSLGEMATYLPVSGSFSTYATRFVDPSLGFALGWNYWFNWVVTVAADITIAAQVIQYWTPLQGIPAWAWSALFLVIIFSLNSLSVRVYGESEYWLALIKVITVIVFIAIGLLTIVGIMGGHVVGFEIFNKGEGPILGGNLGGSLLSILGVFLIAGFSFQGTELIGITAGESENPERAVPKAIKQVFWRILLFYILAIFVIGMLIPYDSSALMGGSDNVATSPFTLVFKNAGFAFAASFMNAVILTSVLSAGNSGMYASTRMLYSMSKDKLAFEAFGKTNKNGVPYMSLLVTAIIVVIIFVLQSLTKGAYEYIVAASGLTGFIAWVGIAVSHYRFRRAFDKQNYDKSKLKYTAKLFPFGPLFAGFLCIVVIIGQDVDFIKTGDFNFSRFLITYMGIPVFLAFFIYHKLRYKTKKIPLEQVDLRQDVSMDEIKG
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS08475 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]