NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS08475 [old locus tag: SA1505 ]
• pan locus tag^?: SAUPAN004301000
• symbol: SA_RS08475
• pan gene symbol^?: lysP
• synonym:
• product: gamma-aminobutyrate permease

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS08475 [old locus tag: SA1505 ]
• symbol: SA_RS08475
• product: gamma-aminobutyrate permease
• replicon: chromosome
• strand: -
• coordinates: 1712104..1713597
• length: 1494
• essential: unknown

⊟Accession numbers

• Location: NC_002745 (1712104..1713597) NCBI
• MicrobesOnline:

⊟Phenotype

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⊟DNA sequence

• 1
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  481
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  661
  721
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  841
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  1021
  1081
  1141
  1201
  1261
  1321
  1381
  1441
  
  ATGTCAAAAGTTCAAAATGAAAGTAACAATGTTGTCAAAAGGGGACTTAAAGATCGTCAT
  ATTTCTATGATTGCGATTGGGGGTTGTATTGGTACAGGTTTATTTGTAACTTCTGGTGGA
  GCAATTCATGATGCAGGTGCTTTGGGTGCATTAATAGGATACGCAATTATCGGAATAATG
  GTATTTTTCTTAATGACGTCACTTGGTGAAATGGCTACGTATTTACCAGTATCAGGTTCA
  TTTAGTACATATGCTACAAGATTTGTTGATCCATCTTTAGGGTTTGCGCTTGGTTGGAAC
  TATTGGTTTAACTGGGTAGTAACTGTAGCAGCAGATATTACGATTGCAGCACAAGTCATT
  CAATATTGGACACCATTGCAAGGCATACCCGCTTGGGCATGGAGTGCGTTGTTTTTAGTT
  ATAATTTTTAGTCTGAATTCGTTATCAGTTCGCGTCTATGGTGAAAGTGAATACTGGTTG
  GCATTGATAAAAGTGATTACAGTTATTGTTTTCATTGCAATTGGTTTATTAACGATTGTA
  GGAATCATGGGTGGTCATGTTGTAGGATTTGAAATATTTAATAAAGGTGAAGGTCCTATT
  CTTGGTGGCAACTTAGGAGGAAGTTTGTTATCAATTCTAGGTGTATTCTTAATCGCTGGT
  TTCTCATTCCAAGGTACTGAGTTAATTGGTATTACGGCTGGTGAATCAGAAAATCCTGAA
  CGTGCTGTGCCGAAAGCAATTAAACAAGTATTCTGGAGAATTTTATTATTTTACATTTTA
  GCCATTTTTGTTATCGGTATGTTAATTCCTTATGATAGTAGTGCATTAATGGGTGGTAGT
  GATAATGTAGCAACGTCTCCATTCACATTAGTGTTTAAAAATGCTGGATTTGCGTTTGCA
  GCATCATTTATGAATGCAGTCATTTTAACGTCTGTGTTATCAGCAGGTAACTCAGGTATG
  TATGCTTCAACCCGAATGCTATATTCAATGAGTAAAGATAAATTAGCGTTTGAAGCATTT
  GGTAAAACAAATAAAAACGGTGTGCCATATATGTCGTTACTCGTTACAGCAATCATTGTA
  GTGATTATTTTCGTATTACAAAGCCTTACAAAAGGTGCATACGAATATATCGTTGCAGCA
  AGTGGTTTAACTGGTTTTATTGCTTGGGTAGGTATAGCAGTAAGTCATTATCGATTTAGA
  AGAGCATTTGATAAACAAAATTATGACAAATCTAAATTAAAATATACTGCTAAATTATTC
  CCATTCGGACCATTATTTGCTGGCTTTTTATGTATTGTAGTAATTATTGGTCAAGATGTT
  GACTTTATTAAAACAGGAGATTTTAATTTTAGTCGCTTCTTAATTACGTATATGGGAATT
  CCAGTATTTTTAGCATTCTTTATTTATCATAAGCTTCGATATAAAACGAAAAAAATTCCA
  TTAGAACAAGTAGATTTACGTCAAGACGTGTCAATGGATGAAATAAAAGGTTAA
  60
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  1260
  1320
  1380
  1440
  1494
  

⊟Protein

⊟General

• locus tag: SA_RS08475 [old locus tag: SA1505 ]
• symbol: SA_RS08475
• description: gamma-aminobutyrate permease
• length: 497
• theoretical pI: 9.51176
• theoretical MW: 54232.5
• GRAVY: 0.655936

⊟Function

• reaction:
• TIGRFAM:
  MetabolismTransport and binding proteinsAmino acids, peptides and aminesamino acid permease (yeast) (TIGR00913; HMM-score: 468.2)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminesGABA permease (TIGR01773; HMM-score: 308.9)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminesamino acid transporter (TIGR00909; HMM-score: 96.4)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminestransporter, basic amino acid/polyamine antiporter (APA) family (TIGR00905; HMM-score: 69.5)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminesarginine-ornithine antiporter (TIGR03810; HMM-score: 55.8)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminesethanolamine permease (TIGR00908; HMM-score: 52.9)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminesL-type amino acid transporter (TIGR00911; HMM-score: 52.9)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminescationic amino acid transport permease (TIGR00906; HMM-score: 51.5)
  histidine-histamine antiporter (TIGR04298; HMM-score: 25.9)
  putative glutamate/gamma-aminobutyrate antiporter (TIGR03813; HMM-score: 14.8)
  Genetic information processingProtein fateProtein and peptide secretion and traffickingtype VII secretion protein EssC (TIGR03928; HMM-score: 12)
• TheSEED:
• PFAM:
  APC (CL0062) AA_permease; Amino acid permease (PF00324; HMM-score: 446.5)
  AA_permease_2; Amino acid permease (PF13520; HMM-score: 159.8)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 12
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.179
  • Ymax_pos: 42
  • Cmax: 0.152
  • Cmax_pos: 48
  • Smax: 0.369
  • Smax_pos: 27
  • Smean: 0.218
  • D: 0.194
• predicted transmembrane helices (TMHMM): 12

⊟Accession numbers

• GI: 445971290 NCBI
• RefSeq: WP_000049145 NCBI
• UniProt:

⊟Protein sequence

• MSKVQNESNNVVKRGLKDRHISMIAIGGCIGTGLFVTSGGAIHDAGALGALIGYAIIGIMVFFLMTSLGEMATYLPVSGSFSTYATRFVDPSLGFALGWNYWFNWVVTVAADITIAAQVIQYWTPLQGIPAWAWSALFLVIIFSLNSLSVRVYGESEYWLALIKVITVIVFIAIGLLTIVGIMGGHVVGFEIFNKGEGPILGGNLGGSLLSILGVFLIAGFSFQGTELIGITAGESENPERAVPKAIKQVFWRILLFYILAIFVIGMLIPYDSSALMGGSDNVATSPFTLVFKNAGFAFAASFMNAVILTSVLSAGNSGMYASTRMLYSMSKDKLAFEAFGKTNKNGVPYMSLLVTAIIVVIIFVLQSLTKGAYEYIVAASGLTGFIAWVGIAVSHYRFRRAFDKQNYDKSKLKYTAKLFPFGPLFAGFLCIVVIIGQDVDFIKTGDFNFSRFLITYMGIPVFLAFFIYHKLRYKTKKIPLEQVDLRQDVSMDEIKG

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SA_RS08475 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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