NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS12910 [old locus tag: SA2247 ]
- pan locus tag?: SAUPAN006016000
- symbol: SA_RS12910
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS12910 [old locus tag: SA2247 ]
- symbol: SA_RS12910
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2523376..2523831
- length: 456
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (2523376..2523831) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
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421TTGAAAAAATTATGTTCATTAATTGTAGTAGCATTAATTTGTATCATTGCATTATCAGCT
TGTGGTAAAGAACAAACCAAAACATATGAAGGTGATGTTAGTGGTAAACATGTACTAACT
TCTATCACATATAAAGATGATAAGGTTTTAAAACAGTCTACAATCAACACAATTAAATAT
GACGATCTAGGTATGGATAAAGACGAAGCCAAAAAGTTATTCGCCAAATCTGAAAGTATT
TTCAAAGACCTTAAAGGCGTAAAATACAAAGTAGACTATAAAGATAAAAAAGCAATTGAA
CACTTAGACATAGATTACACAGAAGTTGACATGAAAAAATTAAATAAACGTCTTGGTGTT
TCAACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGA
GGTTTAAAAGAAAAAGATAAAATGGACGACAAATAG60
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456
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS12910 [old locus tag: SA2247 ]
- symbol: SA_RS12910
- description: hypothetical protein
- length: 151
- theoretical pI: 9.59597
- theoretical MW: 17325.1
- GRAVY: -0.686755
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Transport and binding proteinsAmino acids, peptides and amineslipoprotein, PulS/OutS family (TIGR01004; HMM-score: 12.7)
- TheSEED:
- PFAM: no clan definedDUF1307; Protein of unknown function (DUF1307) (PF06998; HMM-score: 127.7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide length 23 aa
- Ymax: 0.457
- Ymax_pos: 23
- Cmax: 0.246
- Cmax_pos: 27
- Smax: 0.962
- Smax_pos: 19
- Smean: 0.885
- D: 0.624
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKKLCSLIVVALICIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKYDDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGVSTKENKDISFEKLEKQLKHRGLKEKDKMDDK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS12910 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]