From AureoWiki
Jump to: navigation, search

NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12910 [old locus tag: SA2247 ]
  • pan locus tag?: SAUPAN006016000
  • symbol: SA_RS12910
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS12910 [old locus tag: SA2247 ]
  • symbol: SA_RS12910
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2523376..2523831
  • length: 456
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_002745 (2523376..2523831) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGAAAAAATTATGTTCATTAATTGTAGTAGCATTAATTTGTATCATTGCATTATCAGCT
    TGTGGTAAAGAACAAACCAAAACATATGAAGGTGATGTTAGTGGTAAACATGTACTAACT
    TCTATCACATATAAAGATGATAAGGTTTTAAAACAGTCTACAATCAACACAATTAAATAT
    GACGATCTAGGTATGGATAAAGACGAAGCCAAAAAGTTATTCGCCAAATCTGAAAGTATT
    TTCAAAGACCTTAAAGGCGTAAAATACAAAGTAGACTATAAAGATAAAAAAGCAATTGAA
    CACTTAGACATAGATTACACAGAAGTTGACATGAAAAAATTAAATAAACGTCTTGGTGTT
    TCAACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGA
    GGTTTAAAAGAAAAAGATAAAATGGACGACAAATAG
    60
    120
    180
    240
    300
    360
    420
    456

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SA_RS12910 [old locus tag: SA2247 ]
  • symbol: SA_RS12910
  • description: hypothetical protein
  • length: 151
  • theoretical pI: 9.59597
  • theoretical MW: 17325.1
  • GRAVY: -0.686755

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsAmino acids, peptides and amineslipoprotein, PulS/OutS family (TIGR01004; HMM-score: 12.7)
  • TheSEED:
  • PFAM:
    no clan definedDUF1307; Protein of unknown function (DUF1307) (PF06998; HMM-score: 127.7)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide length 23 aa
    • Ymax: 0.457
    • Ymax_pos: 23
    • Cmax: 0.246
    • Cmax_pos: 27
    • Smax: 0.962
    • Smax_pos: 19
    • Smean: 0.885
    • D: 0.624
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit source | edit]

  • GI: 446654730 NCBI
  • RefSeq: WP_000732076 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MKKLCSLIVVALICIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKYDDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGVSTKENKDISFEKLEKQLKHRGLKEKDKMDDK

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SA_RS12910 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS12910&oldid=101282"