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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13220 [old locus tag: SA2305 ]
  • pan locus tag?: SAUPAN006161000
  • symbol: SA_RS13220
  • pan gene symbol?:
  • synonym:
  • product: membrane protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS13220 [old locus tag: SA2305 ]
  • symbol: SA_RS13220
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2591339..2592244
  • length: 906
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (2591339..2592244) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCATACAGGTCATCATCTAAAGTCCAGAAATCATTCTGATTCAATTAACTATTTCTTA
    TACCCCTCTATTGCAAGAGGTTTTGATATTATTTTAACAATGTTTATGTTGTCTTTAGCT
    ATTATTATGACTGCAGGTGGTGCGTCAACCATTCATCAAAGTTTCAACTTACCGTATTGG
    CTGAGCGCACTCATATTAGTCGCCTTTATTTTAGCAACACTGTTTCTAAAATTCGATCGT
    TTAATTGCTGTGCTTGGTGGAGTTACTCCATTTTTAATTGCAATTGTCATTATGATTGCG
    GTCTACTATTTCACAACGAGTCATCTTGATTTTACTGCCGCTAATAATGATGCTCAGATT
    CATAAGCAGAAATCATTATCACCTGGATGGTGGTTTGATGCGATTAACTATGCAAGCTTG
    CAAATTGCTGCTGCCTTCAGCTTCTTATCAGTGATGGGTAGCAAAGTTAAATATCGTGAC
    TCAACGTTATACGGGGGCTTGATTGGCGGTTTAATCATTACATTTTTACTCATGATGATT
    AACCTAGGTTTAATTTCTCAATTCGATAAAATTAAACACGTCGATTTACCTACATTAAAA
    TTAGCGACACAAATGTCTCCGTCAATTGGTATTATTATGTCTGTCATTATGATACTTGTC
    ATCTACAATACTGTTGTTGGATTAATGTATGCATTTGCGTCACGTTTCAGCGTTCCATTC
    AGCAGACGTTACTTCATCATTATTATTACAATGGCTGTCATCACTTATATTAGTACATTT
    ATCGGTTTCATTTCATTAATTGGAAAAGTATTCCCTATTATGGGATTGTTCGGTTTCATC
    TTACTCATACCTGTACTCTATAAAGGTTTAATTAAGCGTATTACCGGCAAATCTCATATC
    GATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    906

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS13220 [old locus tag: SA2305 ]
  • symbol: SA_RS13220
  • description: membrane protein
  • length: 301
  • theoretical pI: 10.2106
  • theoretical MW: 33521
  • GRAVY: 0.876744

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.19
    • Ymax_pos: 48
    • Cmax: 0.194
    • Cmax_pos: 48
    • Smax: 0.234
    • Smax_pos: 47
    • Smean: 0.116
    • D: 0.161
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_011443661 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MHTGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMTAGGASTIHQSFNLPYWLSALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVYYFTTSHLDFTAANNDAQIHKQKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRDSTLYGGLIGGLIITFLLMMINLGLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMILVIYNTVVGLMYAFASRFSVPFSRRYFIIIITMAVITYISTFIGFISLIGKVFPIMGLFGFILLIPVLYKGLIKRITGKSHID

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS13220 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]