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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000248
- pan locus tag?: SAUPAN000146000
- symbol: JSNZ_000248
- pan gene symbol?: —
- synonym:
- product: DUF4064 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000248
- symbol: JSNZ_000248
- product: DUF4064 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 286195..286584
- length: 390
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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241
301
361ATGGAAAAATTAATCAAAGTGACGTCTTTAATTGGAATTATTATTCAAAGTTTTTTAACA
TTGTTATTTTTATTATTTTTAATTTTATCAGCAACAGGCATTATACAGCCAGAATTGACC
ACAACTGTTAATGGTGAACAAACTATACAAAGCCCAGAAACTGCTCAAGCAACATTCGTG
ACAATATTCGCAATATTATTTGTTGTTTCTTTAGTTTCAGATTTATTAGGCATTATAGCT
ATGAAAAAGTTGTTTGTGAATAATAAAGCGAGTGGTATTTTGTATATTATTGGTGCAGTT
ATCAGTGCCAATTTATTAACATTTATTGCTTGGTTAATAAGTGGGATTTCTGTTTTAAGA
TATAACAAAATAGGAAAAGAAGTGTCATAG60
120
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390
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000248
- symbol: JSNZ_000248
- description: DUF4064 domain-containing protein
- length: 129
- theoretical pI: 9.69421
- theoretical MW: 13986.7
- GRAVY: 1.0907
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: TSPAN_4TM-like (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 54.6)and 4 morePeroxisome (CL0484) Reticulon; Reticulon (PF02453; HMM-score: 13.1)TBC-like (CL0816) RabGap-TBC_2; RabGAP TBC domain (PF23436; HMM-score: 13)no clan defined PufQ; PufQ cytochrome subunit (PF05398; HMM-score: 10.8)SCAMP; SCAMP family (PF04144; HMM-score: 10.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.7031
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.2961
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.037999
- TAT(Tat/SPI): 0.000857
- LIPO(Sec/SPII): 0.104319
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MEKLIKVTSLIGIIIQSFLTLLFLLFLILSATGIIQPELTTTVNGEQTIQSPETAQATFVTIFAILFVVSLVSDLLGIIAMKKLFVNNKASGILYIIGAVISANLLTFIAWLISGISVLRYNKIGKEVS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000245 > JSNZ_000246 > JSNZ_000247 > JSNZ_000248 > JSNZ_000249
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)