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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000372
- pan locus tag?: SAUPAN000597000
- symbol: JSNZ_000372
- pan gene symbol?: —
- synonym:
- product: tandem-type lipoprotein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000372
- symbol: JSNZ_000372
- product: tandem-type lipoprotein
- replicon: chromosome
- strand: +
- coordinates: 405457..406233
- length: 777
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721TTGAAGTGCTTTCAGAAATTATACATGTTTATATTAATTTTAATCGTATTAATCACAGGA
TGCGAAAGTAATAATGATGGCAAAGGTTCAAAAGAAACACAAATCAAAAAGAGCTTTGCG
AAAACATTAGATATGTATCCTACTGAAAATCTAGAAGACTTTTATGACAAAGAGGGATAT
CGAGATGGAGAATTTAAAAAAGGCGACAAAGGTACTTGGGTTATTAGATCTGAAATGACA
ACAGAACTAAAAGATGAAAATATGGAGTCCAAAGGTATGGTTGTACGTTTAAATAGAAAT
ACCAGAACAACTACAGGTGAGTATTTTGTTAGGATAATTAAAGAAGACAGTGAGGGCAAG
GTATATAGTGATGAACGAAAATACCCAGTCAAAATTGAAAATAATAAAATTATTCCATTA
AAACCAATTGATGATGAAAAAGTTGAAAAAGAAATTGAAGAATTTAAATTCTTTGTACAA
TATGGGAATTTTGAAGAATTGGAAAACTATAAAGACGGTGAAGTGACATATAACCCAGAA
GCACCAATACACTCTGCACAATATCAATTGAAAAACAGTGATCATAATGTAGAACAACTA
CGTAAGCGATATAATATCCCAACAAGAAAGGTACCTAAATTGTTATTGAAAGGCTCAGGC
AATTTAAAAGGTTCATCAGTCGGATATAAAAATATTGAATTTACCTTTGTTGAAAACAAA
GAAGAAAATATTTACTTCACAGATATTATTAATTTCAATCCAAGTGAGGATATTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000372
- symbol: JSNZ_000372
- description: tandem-type lipoprotein
- length: 258
- theoretical pI: 5.18881
- theoretical MW: 30242
- GRAVY: -0.831395
⊟Function[edit | edit source]
- TIGRFAM: Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 343.8)
- TheSEED:
- PFAM: LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 360)and 2 moreOB (CL0021) tRNA_anti-like; tRNA_anti-like (PF12869; HMM-score: 13.4)no clan defined ETRAMP; Malarial early transcribed membrane protein (ETRAMP) (PF09716; HMM-score: 7.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0008
- Cytoplasmic Membrane Score: 0.7668
- Cell wall & surface Score: 0.0082
- Extracellular Score: 0.2242
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 20 aa
- SP(Sec/SPI): 0.000406
- TAT(Tat/SPI): 0.00004
- LIPO(Sec/SPII): 0.999428
- Cleavage Site: CS pos: 20-21. ITG-CE. Pr: 0.9998
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MKCFQKLYMFILILIVLITGCESNNDGKGSKETQIKKSFAKTLDMYPTENLEDFYDKEGYRDGEFKKGDKGTWVIRSEMTTELKDENMESKGMVVRLNRNTRTTTGEYFVRIIKEDSEGKVYSDERKYPVKIENNKIIPLKPIDDEKVEKEIEEFKFFVQYGNFEELENYKDGEVTYNPEAPIHSAQYQLKNSDHNVEQLRKRYNIPTRKVPKLLLKGSGNLKGSSVGYKNIEFTFVENKEENIYFTDIINFNPSEDI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]