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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000569
  • pan locus tag?: SAUPAN002466000
  • symbol: JSNZ_000569
  • pan gene symbol?: —
  • synonym:
  • product: flavodoxin family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000569
  • symbol: JSNZ_000569
  • product: flavodoxin family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 605983..606519
  • length: 537
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATTACTGTTTTGTTTGGTGGGAGTAGACCAAACGGTAATACTGCACAATTAACAAAA
    TTCGCTTTGCAAGATTTAGAGTATCAATGGATTGACGTGACACAACATCAGTTTAAACCG
    ATACGTGACGTGAGACATACAACAGAGACTATTACTTCATATGACGATGACTATTTGCCG
    ATTCTAGATAAAATATTGGCTAGTGATACAATTATTTTTGCATCACCAGTGTATTGGTAT
    AGCATTTCAGCACCATTGAAAGCATTTATCGAACATTGGTCAGAAACATTACAAGATAAA
    CGATATCCTAATTTTAAGGCACAAATGGCCGAAAAGGATTTTAGAGTTATTTTAGTTGGT
    GGAGATTGTCCAAAAATAAAAGCGAAGCCAGCAATTACGCAAATGAAATATAGTTTAGAC
    TTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATC
    ATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    537

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000569
  • symbol: JSNZ_000569
  • description: flavodoxin family protein
  • length: 178
  • theoretical pI: 6.26176
  • theoretical MW: 20273.1
  • GRAVY: -0.255056

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Central intermediary metabolism Sulfur metabolism FMN reductase (TIGR03567; EC 1.5.1.38; HMM-score: 18.9)
    FMN reductase (TIGR03566; EC 1.5.1.-; HMM-score: 18.4)
    and 1 more
    LLM-partnered FMN reductase, CE1759 family (TIGR04037; EC 1.-.-.-; HMM-score: 12.2)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Flavoprotein (CL0042) FMN_red; NADPH-dependent FMN reductase (PF03358; HMM-score: 58.3)
    and 3 more
    Flavodoxin_2; Flavodoxin-like fold (PF02525; HMM-score: 46)
    Flavodoxin_5; Flavodoxin domain (PF12724; HMM-score: 15.9)
    vWA-like (CL0128) DUF1194; Protein of unknown function (DUF1194) (PF06707; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9697
    • Cytoplasmic Membrane Score: 0.0177
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0122
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002914
    • TAT(Tat/SPI): 0.000218
    • LIPO(Sec/SPII): 0.0007
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTTETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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