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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000847
- pan locus tag?: SAUPAN002972000
- symbol: JSNZ_000847
- pan gene symbol?: —
- synonym:
- product: PBSX family phage terminase large subunit
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000847
- symbol: JSNZ_000847
- product: PBSX family phage terminase large subunit
- replicon: chromosome
- strand: +
- coordinates: 853335..854630
- length: 1296
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1261ATGTATGAAATACTTGATCTAAAAAATAAAATCGGTGGTGGCTACAATAAGTTTTGGCAC
AACAAAAACTTTTACCGTGTTGTTAAAGGTTCAAGGGGTAGCAAGAAAAGTAAAACTACC
GCTATTAATCTCATTTATCGAATAATGAAATATCATTGGGCAAATATACTTGTAGTCAGA
AGATTTAGCAACACTAACAAACAATCAACGTATACAGATTTAAAGTGGGCAACTAACCAA
TTAGGCGTTGCTCACTTATTTAAATTCAACGAAAGTTTGCCGGAAATAACGTATAAACCT
ACTGGACAAAAAATACTGTTTAGAGGTTTAGACGACCCATTGAAAATAACATCGATTACT
GTTGATACAGGCATTTTGTGTTGGGCTTGGTTTGAAGAGGCTTATCAAATAGAAACATTC
GCTAAGTTTAGCACTGTTGTTGAGTCAATACGTGGTAGCTACGATAGTCCGGAATTTTTC
AAGCAAATCACAGTCACTTTTAACCCGTGGTCGGAAAGACATTGGTTGAAGCCTACATTT
TTTGATGAAGAAACAAAATTAAACAATACTTTTTCAGATACAACAACTTATAGAGTTAAT
GAATGGCTAGATAAAGTCGATATTGAACGATATGAAGATTTGTATATAAAGAATCCTAGA
CGTGCAAGAATCGTTTGTGATGGAGATTGGGGTGTTGCAGAGGGGCTTGTATTCGATAAT
TTTAAAGTGGAAGACTTTGATTGGTTTGAGGAGTTTAAAAGAACGCAAGAAATAACTCAC
GGAATGGATTTTGGATTTAGTCAAGACCCTACAACAGTTGTTAGTACGGTTGTAGATTTA
AAAAACAAAAAGTTATTCATCTATGATGAACACTATAAAAAAGCGATGTTAACTGATGAT
ATAAAACAAATGCTTATTAAAAAAGGATTAGGTGATGTAGATATTGCAGCTGATTATGGG
GCTGGTGGAGATAGAGTGATCAGTGAATTGAAATCTAAAGGGATTAAAGGTATAAGAAAA
GCGTTGAAAGGCGCTAATACTATTTTACCAGGCATTCAATTCATTCAAGGCTTTGAAGTT
ATTATACACCCATCATGTGAACACGCTATTGAAGAGTTCAACACTTATACATTTGACCAA
GATAATGATGGTAAGTGGTTGAACAAGCCTATAGATGCTAATAACCATATTATCGATGCA
TTGCGTTATAGTCTTGAGAAATATCATATCGTACGTAAAAAACGTAAAAAGAATATAGAA
AGCAAAACAAAAGTAATTAAATCTCTAGGATTATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000847
- symbol: JSNZ_000847
- description: PBSX family phage terminase large subunit
- length: 431
- theoretical pI: 9.26767
- theoretical MW: 50190.9
- GRAVY: -0.501856
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage terminase, large subunit, PBSX family (TIGR01547; HMM-score: 156)
- TheSEED:
- PFAM: P-loop_NTPase (CL0023) Terminase_3; Phage terminase large subunit (PF04466; HMM-score: 219.7)and 3 moreRNase_H (CL0219) Terminase_3C; Terminase RNAseH like domain (PF17288; HMM-score: 116.8)Terminase_6C; Terminase RNaseH-like domain (PF17289; HMM-score: 18.6)no clan defined DUF5484; Family of unknown function (DUF5484) (PF17583; HMM-score: 12.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7118
- Cytoplasmic Membrane Score: 0.0592
- Cell wall & surface Score: 0.0007
- Extracellular Score: 0.2283
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.053733
- TAT(Tat/SPI): 0.002141
- LIPO(Sec/SPII): 0.002196
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MYEILDLKNKIGGGYNKFWHNKNFYRVVKGSRGSKKSKTTAINLIYRIMKYHWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVEDFDWFEEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKLFIYDEHYKKAMLTDDIKQMLIKKGLGDVDIAADYGAGGDRVISELKSKGIKGIRKALKGANTILPGIQFIQGFEVIIHPSCEHAIEEFNTYTFDQDNDGKWLNKPIDANNHIIDALRYSLEKYHIVRKKRKKNIESKTKVIKSLGL
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000846 > JSNZ_000847 > JSNZ_000848 > JSNZ_000849
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)