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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000871
- pan locus tag?: SAUPAN002998000
- symbol: JSNZ_000871
- pan gene symbol?: —
- synonym:
- product: BppU family phage baseplate upper protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000871
- symbol: JSNZ_000871
- product: BppU family phage baseplate upper protein
- replicon: chromosome
- strand: +
- coordinates: 875274..876512
- length: 1239
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1201ATGTACAAAATAAAAGATGTTGAAACGAGAATAAAAAATGATGGTGTTGACTTAGGTGAC
ATTGGCTGTCGATTTTACACTGAAGATGAAAATACAGCATCTATAAGAATAGGTATCAAT
GACAAACAAGGTCGTATCGATCTAAAAGCACATGGCTTAACACCTACATTGCATTTGTTT
ATGGAAGATGGCTCTATATTCAAAAATGAGCCCCTTATTATGGACGATGTTGTAAAAGGG
TTCATTACCTACAAGATACCTAAAAAGGTTATCAAACACGCTGGTTATGTTCGTTGTAAG
CTGTTTTTAGAGAAAGAAGAAGAAAAAATACATGTCGCGAACTTTTCTTTCAATATCGTT
GATAGTGGCATTGAATCTGCTGTAGCAAAAGAAATCGATGTTAAATTGGTAGATGATGCT
ATTACGAGAATTTTAAAAGATAACGCGACAGATTTATTGAGCAAAGACTTTAAAGAGAAA
ATAGATAAAGATGTCATTTCTTACATCGAAAAGAATGAAAGTAGATTTAAAGGTGCGAAA
GGTGATAAAGGCGAACCGGGACAACCTGGAGCAAAAGGTGAAGCAGGTAAAAAAGGAGAA
CAAGGCGCACCCGGTAAAAACGGTACTGTAGTATCAATCAATCCTGACACTAAAATGTGG
CAAATTGATGGTAAAGATACAGATATCAAAGCAGAACCTGAGTTATTGGACAAAATCAAT
ATCGCAAATGTTGAAGGGTTAGAAAATAAATTGCAAGAAGTTGAAAAAATCAAAGATACA
ACTCTCAACGACTCTAAAACGTATACGGATTCAAAAATTGCTGAACTAGTTGATAGCGCG
CCTGAATCTATGAATACATTAAGAGAATTAGCAGAAGCAATACAAAACAACTCTATTTCA
GAAAGTGTATTGCAACAGATTGGCTCAAAAGTTAGTACAGAAGATTTTGAGGGATTCAAG
CAATCATTAAACAGTTTGTATGCAGATAAAAATCATAGTCATACAATCAAACAGATTGAA
GGATTAGAAAATGCTTTATCAAAAAAATCAGACATAAATCACAGTCATGATGAACGTTAT
CTTTTATCATCAAATGCTTTTACAAAAGAGGAAGCAGATAAACTTTATCAACCTATCGGT
TCTTCGCAGCCGTCACTGAATATTTGGACGGGCAGTGAAACAGAATATAATTATTTGTAT
CAAAAAGACCCTAATACACTTTACTTAATTAAGGGGTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000871
- symbol: JSNZ_000871
- description: BppU family phage baseplate upper protein
- length: 412
- theoretical pI: 4.96699
- theoretical MW: 46030.4
- GRAVY: -0.659223
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: E-set (CL0159) BppU_N; BppU N-terminal domain (PF10651; HMM-score: 120.9)and 3 moreno clan defined PTR; Phage tail repeat like (PF12789; HMM-score: 30.9)Phage_tail_C; Phage tail tip domain (PF24243; HMM-score: 26.2)Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 25.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cell wall & surface
- Cytoplasmic Score: 0.1584
- Cytoplasmic Membrane Score: 0.0018
- Cell wall & surface Score: 0.7098
- Extracellular Score: 0.13
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005502
- TAT(Tat/SPI): 0.000503
- LIPO(Sec/SPII): 0.001682
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQGRIDLKAHGLTPTLHLFMEDGSIFKNEPLIMDDVVKGFITYKIPKKVIKHAGYVRCKLFLEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEKIDKDVISYIEKNESRFKGAKGDKGEPGQPGAKGEAGKKGEQGAPGKNGTVVSINPDTKMWQIDGKDTDIKAEPELLDKINIANVEGLENKLQEVEKIKDTTLNDSKTYTDSKIAELVDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFEGFKQSLNSLYADKNHSHTIKQIEGLENALSKKSDINHSHDERYLLSSNAFTKEEADKLYQPIGSSQPSLNIWTGSETEYNYLYQKDPNTLYLIKG
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000870 > JSNZ_000871 > JSNZ_000872 > JSNZ_000873 > JSNZ_000874
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)