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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0909
  • pan locus tag?: SAUPAN003240000
  • symbol: NWMN_0909
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0909
  • symbol: NWMN_0909
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1007592..1007882
  • length: 291
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    TTGAAAATTCTAAAGTTAGAAATATTGGTTTTCACAACGAATTTAAGTAGAATTATAGTT
    AAGGAGGATTTACAAATGAAAGTCAATAAAGCCATTTATGTTATTGTTGCATTATTTCTT
    GGAGGTTTAGGTATTCATAAATTTTATGCTGATAAATTTGGACAAGGTCTTTTTCACTTA
    TTATTTTTCTGGACAGGTATCCCTACCATCATCTCAATAATACATGCAATTTTTGTCATT
    TTTACTAAAAAAGCAGATAAAGATGGTTATATTATATTCCCTAAAAATTAA
    60
    120
    180
    240
    291

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_0909
  • symbol: NWMN_0909
  • description: hypothetical protein
  • length: 96
  • theoretical pI: 10.3817
  • theoretical MW: 11001.3
  • GRAVY: 0.7125

Function[edit | edit source]

  • TIGRFAM:
    CitB domain protein (TIGR02484; HMM-score: 11.1)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined TM2; TM2 domain (PF05154; HMM-score: 56.5)
    and 2 more
    2TM; 2TM domain (PF13239; HMM-score: 14.2)
    Psm4; Phenol-soluble modulin alpha 4 peptide (PF17063; HMM-score: 7.2)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001801
    • TAT(Tat/SPI): 0.000069
    • LIPO(Sec/SPII): 0.001797
  • predicted transmembrane helices (TMHMM): 2

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKILKLEILVFTTNLSRIIVKEDLQMKVNKAIYVIVALFLGGLGIHKFYADKFGQGLFHLLFFWTGIPTIISIIHAIFVIFTKKADKDGYIIFPKN

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]