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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1003 [new locus tag: NWMN_RS05645 ]
  • pan locus tag?: SAUPAN001647000
  • symbol: NWMN_1003
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1003 [new locus tag: NWMN_RS05645 ]
  • symbol: NWMN_1003
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1108620..1109390
  • length: 771
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGGCAACATTTAGAACGATAAAAGAAAGTGGCGATTTTGTAACTGTGCATAAATCTTTT
    GTGTTCGATAGTAATTTAAGTGCTAAAGCTAAAGGGATATTATTGTATTTCCTAAGTCGT
    CCTGACAATTGGCAAATATACACGTCAGAAGTAGTTAAACATATGAATGATGGACAAAAA
    TCAATCAATAGTGGCGTTCAAGAACTTATGGATAATAAATATGTTCACAGAATACAAAAA
    AGAGCTGAAAACGGTGTGTTTAAAGGTTTTGAATACTTAGTTTACGAAAAACCAACCGAA
    ATGCCATTTTCGGAAAACGGATTATCGGCAAACGGGTTTTCGGAAAACGGAAAAACGGAA
    AACCGAAAAGGGCGTACTACTAATAATAATAGTACTAATAATGATTTAACTAATAATAAC
    AATACTAATAATGATGGAAGTATATTGTCGGGCAACCCGACTGTGTATTCCATTCCCTAT
    AAAGAAATTATCGAATACTTAAATAAAAAAGCAGGAAAGCATTTTAAACATAATACAGCT
    AAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAGGTTGGAGGATTTTAAA
    AAGGTGATTGATATCAAAACAGCTGAATGGTTAAACACGGATAGCGATAAATACCTTAGA
    CCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAATCAAAAAATACAACCAACT
    GGCACGGATCAATTGGAACGCATGAAGTACGACGAAAGTTATTGGGATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    771

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_1003 [new locus tag: NWMN_RS05645 ]
  • symbol: NWMN_1003
  • description: hypothetical protein
  • length: 256
  • theoretical pI: 9.24218
  • theoretical MW: 29656.8
  • GRAVY: -0.933984

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage conserved hypothetical protein, C-terminal domain (TIGR02220; HMM-score: 131.3)
  • TheSEED: data available for NCTC8325
  • PFAM:
    no clan defined Phg_2220_C; Conserved phage C-terminus (Phg_2220_C) (PF09524; HMM-score: 107.6)
    and 1 more
    Telomerase_RBD; Telomerase ribonucleoprotein complex - RNA binding domain (PF12009; HMM-score: 13.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003258
    • TAT(Tat/SPI): 0.000334
    • LIPO(Sec/SPII): 0.000492
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MATFRTIKESGDFVTVHKSFVFDSNLSAKAKGILLYFLSRPDNWQIYTSEVVKHMNDGQKSINSGVQELMDNKYVHRIQKRAENGVFKGFEYLVYEKPTEMPFSENGLSANGFSENGKTENRKGRTTNNNSTNNDLTNNNNTNNDGSILSGNPTVYSIPYKEIIEYLNKKAGKHFKHNTAKTKDFIKARWNQDFRLEDFKKVIDIKTAEWLNTDSDKYLRPETLFGSKFEGYLNQKIQPTGTDQLERMKYDESYWD

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]