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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1358 [new locus tag: SACOL_RS06915 ]
  • pan locus tag?: SAUPAN003696000
  • symbol: SACOL1358
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1358 [new locus tag: SACOL_RS06915 ]
  • symbol: SACOL1358
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1363806..1364660
  • length: 855
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGTCTTTTTATGTTGTACTTATCATTATCATTGTAGCATTAATTGGTATATTAGTTTTA
    AATCAAAGGTATAGTAATAGTAAAATAGATACCGAAGTTTATGCAAGAAAGCAACTTATT
    AAAAAGAACAAAGCATTAAGTGCAGAAAATGCTGAATTAAGAAGTCAAATGCTGAGTTCT
    AATAATGATGTTGGCCACCATGCATACAAAAATGCTAAAAGAGAATTACGCAAGATTTTA
    GATAGCTATCTCGAAAATGGTAAATTAAAATATTACGATATTATCGTTACAAGCAATTTA
    GCTACTAAACATCCGTTTTTCGAGTATGCACGTTCATTTGATTTTATCATTGTTTCAGAT
    ATCGGTTTAATAAACGTTGATGTAAAAAGCTGGGGTGAAAAAACATTTTATCACTTTGAT
    GTACCTGATGAGCATGATACAGAAATAAGCAATAGTAATATTGAAAAAGTTGTCGGTCAT
    TACATTAGCCAGCAATATCATGATCAGTTTAATTCATCAAGAAAGTCTATCTATACTTTT
    ACAGAAACAGTTCAACCAAATCGTGTTATTTATGATTTTTATGATTATGATCCGTATCAA
    TTAGCAGCAAATAATGCGAAAGCATTAAAGGATCATATTGAACAAAACTTTAACTTTAAA
    GTCCAAAGTACCGGTGTTATTTACTTTAGTGATGGTACAGTTAATATCATTCAAGGTTCT
    GAAGAAAGAGATAAATATGTTGATACAGTTTCAACAAAATCTTCGTTACGACGTATTATT
    AGCGAAGCCATAGAGCTATCTAAACACCCTTTAAATAAAGAACAGGTTGATCAAATCACA
    GCTATATTCAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    855

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL1358 [new locus tag: SACOL_RS06915 ]
  • symbol: SACOL1358
  • description: hypothetical protein
  • length: 284
  • theoretical pI: 7.04044
  • theoretical MW: 32850.8
  • GRAVY: -0.402817

Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 14.7)
  • TheSEED  :
    • FIG01108654: hypothetical protein
  • PFAM:
    PDDEXK (CL0236) NERD; Nuclease-related domain (PF08378; HMM-score: 21.7)
    and 6 more
    AB_hydrolase (CL0028) Abhydrolase_4; TAP-like protein (PF08386; HMM-score: 15)
    no clan defined NYD-SP28_assoc; Sperm tail C-terminal domain (PF14775; HMM-score: 14.9)
    RNase_H (CL0219) OrfB_IS605; Probable transposase (PF01385; HMM-score: 14.6)
    no clan defined YabB; Initiation control protein YabA (PF06156; HMM-score: 14)
    SpoVIF; Stage VI sporulation protein F (PF14069; HMM-score: 12.8)
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 6.1)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.384471
    • TAT(Tat/SPI): 0.00153
    • LIPO(Sec/SPII): 0.039319
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MSFYVVLIIIIVALIGILVLNQRYSNSKIDTEVYARKQLIKKNKALSAENAELRSQMLSSNNDVGHHAYKNAKRELRKILDSYLENGKLKYYDIIVTSNLATKHPFFEYARSFDFIIVSDIGLINVDVKSWGEKTFYHFDVPDEHDTEISNSNIEKVVGHYISQQYHDQFNSSRKSIYTFTETVQPNRVIYDFYDYDPYQLAANNAKALKDHIEQNFNFKVQSTGVIYFSDGTVNIIQGSEERDKYVDTVSTKSSLRRIISEAIELSKHPLNKEQVDQITAIFK

Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Signal peptide containing [1] [2] [3]
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

  1. Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
    Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
    J Proteome Res: 2011, 10(4);1657-66
    [PubMed:21323324] [WorldCat.org] [DOI] (I p)
  3. Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

Relevant publications[edit | edit source]