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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08025 [old locus tag: SACOL1575 ]
  • pan locus tag?: SAUPAN004092000
  • symbol: SACOL_RS08025
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08025 [old locus tag: SACOL1575 ]
  • symbol: SACOL_RS08025
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1609647..1610237
  • length: 591
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_002951 (1609647..1610237) NCBI
  • BioCyc: G1G4B-1686 BioCyc
  • MicrobesOnline: see SACOL1575

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
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    541
    ATGAAGCAAAAAATTATTATGTTTACTCTTGTAACAGTAATATTATTTTGTGCTGTTTTA
    ATTGGTTATCAGATTCCTAAACAACAAGTTAAAATGAAACAAAATCAAATTGAAGATTTG
    CAGGAAGAACAACGTATATTAAGAGATAAAAATGGAGAGTTAAATAAATTAGTAAAGAGA
    CAATCAAAAACAGTTATTTCTGATGAAGAAAAACAAATACGTGAAGTTTCTTCAAATTTT
    GTTAAACAGATGTTTGAAATGAAAAAAGATTCTTCTTTTAAATCAAAAGCACCACAAATA
    AAGCCTTTAGTTACAAAGGATTATTACGATACATTATTTAAGGATTCTAAAGATAAATAT
    GATTTATATGATGATATAACGGTTAATGATATTCATGTTTATTTTGATACTTATGACCCT
    AAAAAAGATAGTTATAAAGTTTTTGTTCAGTTCGACGAACGTATTGAAACAGATGGAGAT
    GATAAAATTGAACATCGTCAAACATCTGCACAATTGGATTTAGTTCGTACAGCTGAAGGT
    TGGCGTATTGATAATTTAAAACGTTTTAATTTAAAACCTCTAGGACGTTAG
    60
    120
    180
    240
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    360
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    540
    591

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS08025 [old locus tag: SACOL1575 ]
  • symbol: SACOL_RS08025
  • description: hypothetical protein
  • length: 196
  • theoretical pI: 9.15714
  • theoretical MW: 23315.6
  • GRAVY: -0.770918

Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 5.8)
  • TheSEED: see SACOL1575
  • PFAM:
    FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 16)
    no clan defined Chordopox_G3; Chordopoxvirus G3 protein (PF06129; HMM-score: 14.1)
    and 4 more
    Peptidase_MA (CL0126) DUF3810; Protein of unknown function (DUF3810) (PF12725; HMM-score: 12.6)
    no clan defined TMF_DNA_bd; TATA element modulatory factor 1 DNA binding (PF12329; HMM-score: 12.4)
    O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 11.3)
    Oxa1 (CL0376) DUF106; Integral membrane protein DUF106 (PF01956; HMM-score: 7.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 4.6
    • Cellwall Score: 2.48
    • Extracellular Score: 2.92
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
    • SP(Sec/SPI): 0.273713
    • TAT(Tat/SPI): 0.001051
    • LIPO(Sec/SPII): 0.406807
    • Cleavage Site: CS pos: 22-23. LIG-YQ. Pr: 0.2194
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKQKIIMFTLVTVILFCAVLIGYQIPKQQVKMKQNQIEDLQEEQRILRDKNGELNKLVKRQSKTVISDEEKQIREVSSNFVKQMFEMKKDSSFKSKAPQIKPLVTKDYYDTLFKDSKDKYDLYDDITVNDIHVYFDTYDPKKDSYKVFVQFDERIETDGDDKIEHRQTSAQLDLVRTAEGWRIDNLKRFNLKPLGR

Experimental data[edit | edit source]

  • experimentally validated: see SACOL1575
  • protein localization: see SACOL1575
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]