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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS14220 [old locus tag: SACOL2719 ]
  • pan locus tag?: SAUPAN006457000
  • symbol: SACOL_RS14220
  • pan gene symbol?: rarD
  • synonym:
  • product: protein RarD

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS14220 [old locus tag: SACOL2719 ]
  • symbol: SACOL_RS14220
  • product: protein RarD
  • replicon: chromosome
  • strand: -
  • coordinates: 2791221..2792129
  • length: 909
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (2791221..2792129) NCBI
  • BioCyc: G1G4B-2973 BioCyc
  • MicrobesOnline: see SACOL2719

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGAATTCAGAGTATAAAAAAGGCATATTTTTAGCACTCAGTGCATACATTCTGTGGGGA
    ATACTACCTATATATTGGCAGTTCGTTGATGCAATAGGCGCATTTGAAATTTTAGCCTTT
    CGTATTATATTTTCAGCAATATTCATGATTTTCATACTCGCGGTTGGACAAAAACAACGC
    AATGCATTTCAACGAGATATGAATCAATTGTTAGGCAAGCCCATTCAGCTATTAGCGATT
    GTCGTAGCAGGCTATGTCATTACATTAAATTGGGGTACATTTATTTGGGCTGTAACGAAC
    GGTCACGTCCTACAAACAAGTTTAGGTTATTATATAAATCCACTTGTTAGCATTTTGCTC
    GCACTTATCTTTTTAAAAGAAAGATTCAATAAATTTGAATGGCTAGCCATTTTATTCGCA
    TTCATCGGTGTATTATATATGACGCTCAAGATTGGAGAATTCCCAATCGTCTCTATTATA
    TTAGCGTTATCCTTTGGTACATACGGATTATTGAAAAAAGTAGTACATATTGATGCCATC
    AGCAGTATTACGATTGAATGTATTGTTACCGCACCTGCTGGACTAATATACGTTATTTAT
    TTATGGCAGCAACATCAGATGTCATTTGGATTGAACATGTCATCATTTTGGTTGTTATTT
    TCTGGTGCTATTACGGCAATACCACTAATCCTATTCTCAGCCGGGGCAAAACGTATTCCA
    CTTTCGCTAATAGGATTTATTCAATACGTTGGACCAACAATAATGTTTGTACTCGGCATA
    TTTGTTTTCAAAGAGCCTTTTAGTATAGATCAATTAATTACGTTTATATTTATTTGGACA
    GGTATTGTGTTATATAGTCTTTCTCAATACATTAAATTGAAGAAACATCCGGTCGCAAAA
    ACCCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    909

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS14220 [old locus tag: SACOL2719 ]
  • symbol: SACOL_RS14220
  • description: protein RarD
  • length: 302
  • theoretical pI: 9.93378
  • theoretical MW: 34119.9
  • GRAVY: 0.97053

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate protein RarD (TIGR00688; HMM-score: 210.5)
    and 1 more
    Metabolism Transport and binding proteins Amino acids, peptides and amines carboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 38)
  • TheSEED: see SACOL2719
  • PFAM:
    DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 90.2)
    and 1 more
    no clan defined RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 6.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006054
    • TAT(Tat/SPI): 0.000451
    • LIPO(Sec/SPII): 0.002399
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIPLSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]