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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000034000
- symbol?: walH
- synonym:
- description?: YycH domain signal transduction protein, putative
- YycH domain signal transduction protein, putative
- YycH protein
- two-component regulator YycH
- yycH family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 33869..35230
- synteny block?: BlockID0000310
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0020 (yycH)
08BA02176:
C248_0023 (yycH)
11819-97:
MS7_0022
6850:
RSAU_000022 (yycH)
71193:
ST398NM01_0022
ECT-R 2:
ECTR2_22
ED133:
SAOV_0022 (yycH)
ED98:
SAAV_0024 (yycH)
HO 5096 0412:
SAEMRSA15_00200 (yycH)
JH1:
SaurJH1_0020
JH9:
SaurJH9_0020
JKD6008:
SAA6008_00020 (yycH)
JKD6159:
SAA6159_00020 (yycH)
LGA251:
SARLGA251_00200 (yycH)
M013:
M013TW_0023
MRSA252:
SAR0020 (yycH)
MSHR1132:
SAMSHR1132_00210
MSSA476:
SAS0020
Mu3:
SAHV_0020
Mu50:
SAV0020
MW2:
MW0020
RF122:
SAB0020 (yycH)
ST398:
SAPIG0022
T0131:
SAT0131_00022 (gpsA)
TCH60:
HMPREF0772_10448 (yycH)
TW20:
SATW20_00200 (yycH)
USA300_TCH1516:
USA300HOU_0020 (yycH)
VC40:
SAVC_00100
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---------MNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTT
N315 MKSLKTVIGMNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTT
NCTC8325 --------------------------MSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTT
Newman MKSLKTVIGMNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTT
USA300_FPR3757 --------------------------MSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTT
**********************************
COL PMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIP
N315 PMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIP
NCTC8325 PMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIP
Newman PMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIP
USA300_FPR3757 PMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIP
************************************************************
COL DLNSDFILFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDNIVLYAISKDRH
N315 DLSSDFTLFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDNIVLYAISKDRH
NCTC8325 DLNSDFILFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDNIVLYAISKDRH
Newman DLNSDFILFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDNIVLYAISKDRH
USA300_FPR3757 DLNSDFILFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDNIVLYAISKDRH
**.*** *****************************************************
COL DYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYRMVF
N315 DYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYRMVF
NCTC8325 DYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYRMVF
Newman DYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYRMVF
USA300_FPR3757 DYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYRMVF
************************************************************
COL NTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKM
N315 NTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKM
NCTC8325 NTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKM
Newman NTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKM
USA300_FPR3757 NTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKM
************************************************************
COL EETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGE
N315 EETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGE
NCTC8325 EETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGE
Newman EETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGE
USA300_FPR3757 EETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGE
************************************************************
COL KGVFDYRRSLLRTDVVLNSEDNKSLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSD
N315 KGVFDYRRSLLRTDVVLNSEDNKTLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSD
NCTC8325 KGVFDYRRSLLRTDVVLNSEDNKSLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSD
Newman KGVFDYRRSLLRTDVVLNSEDNKSLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSD
USA300_FPR3757 KGVFDYRRSLLRTDVVLNSEDNKSLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSD
***********************:************************************
COL HNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE
N315 HNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE
NCTC8325 HNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE
Newman HNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE
USA300_FPR3757 HNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE
*********************************