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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000054000
- symbol?: tnp
- synonym:
- description?: IS6 family transposase IS431mec
- IS6 family transposase IS431mec
- IS431mec, transposase
- putative transposase
- transposase for IS-like element
- Transposase for insertion sequence-like element IS431mec
- integrase catalytic region
- integrase catalytic subunit
- IS1216 transposase
- IS431mec transposase
- IS431 transposase
- transposase for insertion sequence element IS431
- transposase for IS431mec
- transposase IS66 family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 61047..61721
- synteny block?: BlockID0000470
- occurrence?: in 70% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0027
08BA02176:
C248_0038 (tnp2)
11819-97:
MS7_0029
6850:
—
71193:
—
ECT-R 2:
ECTR2_30
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00270
JH1:
SaurJH1_0026
JH9:
SaurJH9_0026
JKD6008:
SAA6008_00027
JKD6159:
SAA6159_00027
LGA251:
—
M013:
M013TW_0041
MRSA252:
SAR0027
MSHR1132:
SAMSHR1132_00280
MSSA476:
—
Mu3:
SAHV_0027 (tnp)
Mu50:
SAV0027 (tnp)
MW2:
MW0027
RF122:
—
ST398:
SAPIG0038
T0131:
SAT0131_00030
TCH60:
HMPREF0772_10440 (tnp)
TW20:
SATW20_00690
USA300_TCH1516:
USA300HOU_0026
VC40:
—
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ
N315 MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ
USA300_FPR3757 MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ
************************************************************
COL IWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRL
N315 IWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRL
USA300_FPR3757 IWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRL
************************************************************
COL IKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRY
N315 IKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRY
USA300_FPR3757 IKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRY
************************************************************
COL QSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
N315 QSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
USA300_FPR3757 QSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
********************************************