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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000992000
- symbol?: capN
- synonym:
- description?: UDP-glucose 4-epimerase
- UDP-glucose 4-epimerase
- capsular polysaccharide biosynthesis protein Cap5N
- cap5N protein/UDP-glucose 4-epimerase
- capsular polysaccharide biosynthesis protein CapN
- capsular polysaccharide synthesis protein Cap5N
- capsular polysaccharide synthesis UDP-glucose 4-epimerase CapN, putative
- capsular polysaccharide type 5/8 biosynthesis epimerase CapN
- Capsular polysaccharide synthesis enzyme Cap8N
- capsular polysaccharide synthesis enzyme Cap5N
- capsular polysaccharide synthesis enzyme CapN
- NAD-dependent epimerase/dehydratase
- NAD dependent epimerase/dehydratase family protein
- polysaccharide biosynthesis family protein
- UDP-N-acetyl-D-quinovosamine 4-epimerase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1260968..1261855
- synteny block?: BlockID0005250
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0163 (capN)
08BA02176:
C248_0151 (capN)
11819-97:
MS7_0156
6850:
RSAU_000116 (capN)
71193:
ST398NM01_0176
ECT-R 2:
ECTR2_119
ED133:
SAOV_0109
ED98:
SAAV_0130 (cap5N)
HO 5096 0412:
SAEMRSA15_01280 (capN)
JH1:
SaurJH1_0153
JH9:
SaurJH9_0148
JKD6008:
SAA6008_00140 (cap5N)
JKD6159:
SAA6159_00146 (cap5N)
LGA251:
SARLGA251_01360 (capN)
M013:
M013TW_0152
MRSA252:
SAR0164 (capN)
MSHR1132:
SAMSHR1132_01360
MSSA476:
SAS0137
Mu3:
SAHV_0161 (capN)
Mu50:
SAV0162 (capN)
MW2:
MW0137 (cap8N)
RF122:
SAB0103 (capN)
ST398:
SAPIG0176
T0131:
SAT0131_00153 (sodA)
TCH60:
HMPREF0772_10336 (cap5N)
TW20:
SATW20_01730 (capN)
USA300_TCH1516:
USA300HOU_0176 (cap5N)
VC40:
SAVC_00580
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNN
N315 MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNN
NCTC8325 MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNN
Newman MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNN
USA300_FPR3757 MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNN
************************************************************
COL SPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMN
N315 SPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMN
NCTC8325 SPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMN
Newman SPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMN
USA300_FPR3757 SPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMN
*********************************************:******:*******
COL PTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNIN
N315 PTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNIN
NCTC8325 PTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNIN
Newman PTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNIN
USA300_FPR3757 PTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNIN
************************************************************
COL NQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSM
N315 NQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSV
NCTC8325 NQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSM
Newman NQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSM
USA300_FPR3757 NQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSM
***********************************************************:
COL LNKYFNKLSVFRKLFGNLIYSNTLYENNNALEIIPGKMSLVIADIMDETTTKDKA
N315 LNKYFNKLSVFRKLFGNLTYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
NCTC8325 LNKYFNKLSVFRKLFGNLIYSNTLYENNNALEIIPGKMSLVIADIMDETTTKDKA
Newman LNKYFNKLSVFRKLFGNLIYSNTLYENNNALEIIPGKMSLVIADIMDETTTKDKA
USA300_FPR3757 LNKYFNKLSVFRKLFGNLIYSNTLYENNNALEIIPGKMSLVIADIMDETTTKDKA
****************** *************:**********************