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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001107000
- symbol?: ldh1
- synonym:
- description?: L-lactate dehydrogenase
- L-lactate dehydrogenase
- L-lactate dehydrogenase 1
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1384835..1385788
- synteny block?: BlockID0006270
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0241 (lctE)
08BA02176:
C248_0226 (ldh1)
11819-97:
MS7_0227
6850:
RSAU_000186 (ldh1)
71193:
ST398NM01_0252
ECT-R 2:
ECTR2_201
ED133:
SAOV_0178 (ldh1)
ED98:
SAAV_0206 (ldh1)
HO 5096 0412:
SAEMRSA15_02000 (ldh1)
JH1:
SaurJH1_0231
JH9:
SaurJH9_0225
JKD6008:
SAA6008_00211 (ldh)
JKD6159:
SAA6159_00218 (ldh)
LGA251:
SARLGA251_02050 (ldh1)
M013:
M013TW_0220
MRSA252:
SAR0234 (ldh1)
MSHR1132:
SAMSHR1132_02090
MSSA476:
SAS0217
Mu3:
SAHV_0240 (lctE)
Mu50:
SAV0241 (lctE)
MW2:
MW0217 (lctE)
RF122:
SAB0180
ST398:
SAPIG0252
T0131:
SAT0131_00231 (aroE)
TCH60:
HMPREF0772_10263 (ldhA)
TW20:
SATW20_02430 (ldh1)
USA300_TCH1516:
USA300HOU_0251 (ldh)
VC40:
SAVC_00945
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPT
N315 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPT
NCTC8325 ------------------------------------------------MDLKHATPYSPT
Newman MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPT
USA300_FPR3757 ------------------------------------------------MDLKHATPYSPT
************
COL TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
N315 TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
NCTC8325 TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
Newman TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
USA300_FPR3757 TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
************************************************************
COL VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
N315 VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
NCTC8325 VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
Newman VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
USA300_FPR3757 VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
************************************************************
COL DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
N315 DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
NCTC8325 DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
Newman DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
USA300_FPR3757 DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
************************************************************
COL ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
N315 ARITEAIFRNEDAVLTVSALLEGEYDEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
NCTC8325 ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
Newman ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
USA300_FPR3757 ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
*************************:**********************************
COL HSAKTLKDIMAEAEELK
N315 HSAKTLKDIMAEAEELK
NCTC8325 HSAKTLKDIMAEAEELK
Newman HSAKTLKDIMAEAEELK
USA300_FPR3757 HSAKTLKDIMAEAEELK
*****************