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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN001768000
  • symbol?:
  • synonym:
  • description?: ATP-dependent helicase

      descriptions from strain specific annotations:

    • ATP-dependent helicase
    • phage helicase
    • SNF2 family protein
    • phage protein
    • SNF2 domain protein
    • SNF2 family N-domain protein
    • SNF2-related protein
    • type III restriction enzyme, res subunit
  • strand?: -
  • coordinates?: 2192971..2194957
  • synteny block?: BlockID0011670
  • occurrence?: in 39% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0345
    11819-97:
    MS7_1472
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_13780
    JH1:
    SaurJH1_1075
    JH9:
    SaurJH9_1055
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1523
    MSHR1132:
    MSSA476:
    SAS0928
    Mu3:
    Mu50:
    MW2:
    MW1405
    RF122:
    ST398:
    SAPIG0369
    T0131:
    TCH60:
    HMPREF0772_11686
    TW20:
    USA300_TCH1516:
    USA300HOU_1456
    VC40:

Genome Viewer[edit | edit source]

NCTC8325
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    NCTC8325        MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIA
    USA300_FPR3757  --------------------------------MGLGKTVSTLTAFSELQLLDTKKMLVIA
                                                    ****************************

    NCTC8325        PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
    USA300_FPR3757  PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
                    ************************************************************

    NCTC8325        KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
    USA300_FPR3757  KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
                    ************************************************************

    NCTC8325        RGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
    USA300_FPR3757  RGERLESSFSRYRERYFKPTHQVSEHIFKWELRDGSEEKIYKQIEDICLSMKAKDYLDMP
                    **************************:*:************::*****************

    NCTC8325        DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDD
    USA300_FPR3757  DRVDTKQTVVLSEKERKVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE
                    ******************* ***************************************:

    NCTC8325        EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNS
    USA300_FPR3757  EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLDDSNYKERWNS
                    *************************************************:**********

    NCTC8325        GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
    USA300_FPR3757  GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
                    ************************************************************

    NCTC8325        TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
    USA300_FPR3757  TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
                    ***********************************